Detailed information NTG0850202

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: QWH96_RS09790
• Genome accession: NZ_CP128987
• Coordinates: 1943965..1944897 (-)
• Length: 310 a.a.
• NCBI ID: WP_003060110.1
• Uniprot ID: A0A9X8T5Q4
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NS3396
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1938965..1949897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QWH96_RS09765 (QWH96_09760)	tsaD	1939455..1940471 (-)	1017	WP_049519729.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
QWH96_RS09770 (QWH96_09765)	rimI	1940461..1940886 (-)	426	WP_049519727.1	ribosomal protein S18-alanine N-acetyltransferase	-
QWH96_RS09775 (QWH96_09770)	tsaB	1940888..1941586 (-)	699	WP_049519725.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
QWH96_RS09780 (QWH96_09775)	-	1941872..1942102 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
QWH96_RS09785 (QWH96_09780)	rnjA	1942104..1943786 (+)	1683	WP_003056700.1	ribonuclease J1	-
QWH96_RS09790 (QWH96_09785)	amiF	1943965..1944897 (-)	933	WP_003060110.1	ATP-binding cassette domain-containing protein	Regulator
QWH96_RS09795 (QWH96_09790)	oppD	1944890..1945942 (-)	1053	WP_338433666.1	ABC transporter ATP-binding protein	Regulator
QWH96_RS09800 (QWH96_09795)	-	1945954..1946985 (-)	1032	WP_003058013.1	ABC transporter permease	-
QWH96_RS09805 (QWH96_09800)	-	1946995..1947909 (-)	915	WP_003052794.1	ABC transporter permease	-
QWH96_RS09810 (QWH96_09805)	-	1948177..1949832 (-)	1656	WP_049519723.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35203.02 Da
• Isoelectric Point: 6.6437

>NTDB_id=850202 QWH96_RS09790 WP_003060110.1 1943965..1944897(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=850202 QWH96_RS09790 WP_003060110.1 1943965..1944897(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526