Detailed information NTG0850169

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: QWH96_RS01815
• Genome accession: NZ_CP128987
• Coordinates: 340853..341776 (+)
• Length: 307 a.a.
• NCBI ID: WP_338433690.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NS3396
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	341804..342791	340853..341776	flank	28

Gene organization within MGE regions

Location: 340853..342791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QWH96_RS01815 (QWH96_01820)	amiF	340853..341776 (+)	924	WP_338433690.1	ABC transporter ATP-binding protein	Regulator
QWH96_RS01820 (QWH96_01825)	-	341804..342791 (-)	988	Protein_317	IS30-like element IS1239 family transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34783.03 Da
• Isoelectric Point: 6.8606

>NTDB_id=850169 QWH96_RS01815 WP_338433690.1 340853..341776(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFKDPAASLNERATVDYIISEGLYNFKLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKKMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide

• Length: 924 bp

>NTDB_id=850169 QWH96_RS01815 WP_338433690.1 340853..341776(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCAAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAAGCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAAAATGCAAGCCGAAAAAGGACTGACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAACCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	81.759	100	0.818
amiF	Streptococcus thermophilus LMD-9	81.433	100	0.814
amiF	Streptococcus salivarius strain HSISS4	81.433	100	0.814