Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QU579_RS14700 Genome accession   NZ_CP128803
Coordinates   3193841..3194566 (+) Length   241 a.a.
NCBI ID   WP_029855940.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3188841..3199566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS14685 (QU579_14925) - 3189946..3192267 (+) 2322 WP_029855941.1 Tex family protein -
  QU579_RS14690 (QU579_14930) - 3192401..3192865 (-) 465 WP_005459035.1 hypothetical protein -
  QU579_RS14695 (QU579_14935) bioH 3192989..3193756 (-) 768 WP_029787240.1 pimeloyl-ACP methyl ester esterase BioH -
  QU579_RS14700 (QU579_14940) comF 3193841..3194566 (+) 726 WP_029855940.1 amidophosphoribosyltransferase Machinery gene
  QU579_RS14705 (QU579_14945) nfuA 3194664..3195248 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  QU579_RS14710 (QU579_14950) nudE 3195469..3196038 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  QU579_RS14715 (QU579_14955) cysQ 3196079..3196906 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QU579_RS14720 (QU579_14960) - 3197192..3197953 (-) 762 WP_029855938.1 type II secretion system protein N -
  QU579_RS14725 (QU579_14965) - 3197955..3198446 (-) 492 WP_025505527.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27633.81 Da        Isoelectric Point: 9.0110

>NTDB_id=849662 QU579_RS14700 WP_029855940.1 3193841..3194566(+) (comF) [Vibrio parahaemolyticus strain NJIFDCVp52]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSRELNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=849662 QU579_RS14700 WP_029855940.1 3193841..3194566(+) (comF) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTCAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACTGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485