Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QU593_RS07260 Genome accession   NZ_CP128801
Coordinates   1470796..1473165 (+) Length   789 a.a.
NCBI ID   WP_079516446.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain SRCM125375     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465796..1478165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU593_RS07240 (QU593_07240) - 1466836..1467255 (+) 420 WP_048006195.1 Rrf2 family transcriptional regulator -
  QU593_RS07245 (QU593_07245) - 1467267..1468409 (+) 1143 WP_290032244.1 cysteine desulfurase family protein -
  QU593_RS07250 (QU593_07250) mnmA 1468438..1469553 (+) 1116 WP_290032245.1 tRNA 2-thiouridine(34) synthase MnmA -
  QU593_RS07255 (QU593_07255) - 1470107..1470778 (+) 672 WP_079516447.1 tetratricopeptide repeat protein -
  QU593_RS07260 (QU593_07260) recD2 1470796..1473165 (+) 2370 WP_079516446.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QU593_RS07265 (QU593_07265) - 1473274..1473498 (+) 225 WP_079516779.1 hypothetical protein -
  QU593_RS07270 (QU593_07270) - 1473514..1473645 (+) 132 WP_079516445.1 YrzQ family protein -
  QU593_RS07275 (QU593_07275) - 1473738..1474823 (+) 1086 WP_079516444.1 AI-2E family transporter -
  QU593_RS07280 (QU593_07280) alaS 1475131..1477755 (+) 2625 WP_290032246.1 alanine--tRNA ligase -
  QU593_RS07285 (QU593_07285) - 1477839..1478105 (+) 267 WP_048006427.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89011.45 Da        Isoelectric Point: 4.7694

>NTDB_id=849593 QU593_RS07260 WP_079516446.1 1470796..1473165(+) (recD2) [Rossellomorea marisflavi strain SRCM125375]
MSQQDSLQLFGDEELYVKGRHLVTIFHNEDNMYSVVRIRVEETNDEGYSDKEAVVTGHFPKLHEEETYSFFGRFQDHPKF
GTQFHADHFKKEIPQSKQGIVHYLSSDLFSGIGTKTAEKIVEHVGENAITKILENPSVLDEVPKLPKEKAKTIFDTLSEH
QGLERVMIMLNDFGFGPQISMKIYQAYKEQALEIIQNNPYKLVEDIEGIGFTRADELGSKIGITGSHPDRIKAGCLYTLE
QMCVKQGHVYLEAEELIVSVKDLLEKSQSVRIEFEEISAQVVALEEEGKVAGEGTKIYTPSLYFSEKGIVTNIERILAQT
DYEDQFPQSEFLLSLGALEDRLGVQYAPSQREAIETALMSPMLLLTGGPGTGKTTVINGIVELYADLHGCSLDPKEYKDE
PFPVLLAAPTGRAAKRMTESTGLPAMTIHRLLGWNGKEGFQTDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPENIQVI
FVGDEDQLPSVGPGQVLKDLLESGRVPTVRLTDIYRQEEGSSIIDLAHQMKAGRLPDDLVKQQKDRSFFPCRTHQITEVV
QKVVENAKKKGFTPKDIQVLAPMYRGPAGIDRLNILLQEIFNKNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDI
GEVVSIFYAKENTEKQDMVIVSYEGTEVTYTRQDLGQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITR
SKQFLILCGEEDAFRMGVEREEDIIRKTTLKERLQTMEDSVPEDDAPIDLMKVDPMIGMEGITPYDFMT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=849593 QU593_RS07260 WP_079516446.1 1470796..1473165(+) (recD2) [Rossellomorea marisflavi strain SRCM125375]
TTGAGCCAGCAAGACTCTTTACAATTATTTGGAGATGAAGAACTGTACGTCAAAGGGCGCCATCTCGTTACGATCTTCCA
CAATGAAGACAATATGTACAGTGTCGTGCGCATCAGGGTGGAAGAGACCAATGATGAGGGCTACAGTGATAAAGAAGCCG
TTGTAACGGGACATTTTCCGAAGCTTCATGAAGAAGAAACCTACTCCTTTTTCGGTCGTTTTCAGGATCATCCGAAGTTC
GGCACTCAGTTTCATGCCGATCATTTCAAGAAGGAAATCCCCCAGTCCAAACAAGGGATCGTCCACTATTTATCCAGTGA
TCTGTTCAGCGGGATCGGGACGAAGACGGCTGAAAAGATCGTGGAACACGTAGGTGAAAATGCCATCACCAAAATCCTTG
AGAATCCATCGGTCCTCGACGAGGTGCCGAAGCTTCCGAAGGAAAAGGCAAAGACCATCTTTGATACATTATCCGAGCAT
CAGGGACTAGAGCGCGTCATGATCATGCTCAACGATTTTGGTTTCGGCCCGCAGATTTCCATGAAGATCTACCAGGCCTA
TAAAGAACAGGCACTGGAGATCATCCAGAACAATCCCTATAAGCTGGTGGAGGATATCGAAGGTATCGGGTTCACCCGTG
CCGACGAACTAGGCTCGAAGATCGGGATCACAGGCAGTCATCCCGACAGGATCAAGGCCGGCTGTTTGTATACGTTGGAG
CAGATGTGCGTGAAACAGGGTCATGTGTACCTTGAGGCGGAAGAACTCATTGTGAGCGTGAAGGACCTACTGGAAAAGAG
TCAGTCCGTACGCATCGAATTCGAGGAGATCTCTGCCCAGGTCGTGGCGCTTGAAGAGGAAGGGAAAGTGGCCGGTGAGG
GGACGAAGATTTACACCCCTTCCCTTTATTTCTCCGAAAAAGGCATTGTCACGAATATCGAGAGAATCCTTGCCCAGACC
GATTATGAAGATCAGTTCCCCCAATCGGAATTCCTCCTTTCCTTAGGTGCATTGGAGGACCGATTGGGCGTGCAGTATGC
TCCTTCACAGCGTGAAGCCATCGAAACGGCACTCATGAGCCCGATGCTCCTCTTGACGGGAGGACCTGGTACGGGAAAAA
CCACCGTCATCAACGGGATTGTCGAGCTGTATGCCGATCTTCACGGTTGTTCGCTTGACCCGAAGGAATATAAGGATGAA
CCGTTCCCGGTGCTTCTTGCTGCCCCGACGGGAAGGGCCGCCAAGCGGATGACGGAATCGACGGGGCTGCCTGCCATGAC
CATCCACCGACTGTTGGGCTGGAATGGAAAAGAAGGTTTTCAGACAGACGAAGAAAGGGCCATCGAAGGAAAGCTGCTGA
TTGTGGATGAAGTATCGATGGTGGATACATGGCTTGCCCATCAGCTCCTCAAGGCCCTGCCTGAAAATATTCAGGTGATC
TTTGTGGGCGATGAAGATCAGCTTCCATCCGTCGGACCGGGACAGGTGCTGAAGGATCTATTGGAATCGGGAAGGGTGCC
GACGGTGCGATTGACGGATATCTACCGCCAGGAAGAAGGCTCTTCCATCATCGACCTTGCCCATCAAATGAAGGCAGGAC
GTTTGCCGGATGACCTTGTGAAGCAGCAGAAGGACCGTTCTTTCTTCCCTTGCCGGACCCATCAGATCACCGAAGTGGTT
CAGAAAGTGGTGGAAAATGCGAAGAAGAAAGGCTTCACACCGAAGGATATTCAGGTTCTGGCCCCGATGTACAGAGGTCC
AGCTGGAATCGACCGGTTGAACATCCTTCTGCAGGAAATCTTCAATAAGAATGATGGAACGAGGAAGGAAATCGCCTTCG
GGGATGTGAAGTACCGGATCGGGGACAAAGTGCTTCAGCTTGTCAACCAGCCCGAGAACAACGTCTTCAACGGGGACATT
GGTGAAGTGGTGTCCATCTTTTACGCAAAGGAAAACACGGAAAAGCAGGATATGGTCATCGTTTCCTACGAGGGGACGGA
GGTCACCTATACCCGTCAGGATCTCGGACAGATCACCCATGCGTACTGCTGCTCCATCCATAAATCCCAGGGAAGTGAGT
TTCCCATCGTCATCCTTCCGGTGGTGAAAAGTTATTACCGTATGCTGAGGAGAAATCTTCTATATACGGCGATCACCAGA
AGCAAGCAGTTCCTCATCCTGTGCGGGGAAGAAGATGCGTTCCGTATGGGGGTCGAACGGGAAGAGGATATCATAAGGAA
GACGACCCTGAAGGAAAGGCTTCAAACAATGGAAGACAGTGTGCCGGAAGACGATGCCCCGATCGACTTGATGAAGGTGG
ACCCGATGATCGGGATGGAGGGCATCACACCGTATGACTTCATGACGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-549)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.312

100

0.629