Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QU593_RS07150 Genome accession   NZ_CP128801
Coordinates   1446229..1448589 (+) Length   786 a.a.
NCBI ID   WP_290032239.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain SRCM125375     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441229..1453589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU593_RS07135 (QU593_07135) - 1442839..1443159 (+) 321 WP_053426463.1 post-transcriptional regulator -
  QU593_RS07140 (QU593_07140) secDF 1443331..1445592 (+) 2262 WP_148984617.1 protein translocase subunit SecDF -
  QU593_RS07145 (QU593_07145) - 1445775..1446119 (+) 345 WP_056535144.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QU593_RS07150 (QU593_07150) recJ 1446229..1448589 (+) 2361 WP_290032239.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QU593_RS07155 (QU593_07155) - 1448580..1449092 (+) 513 WP_048006207.1 adenine phosphoribosyltransferase -
  QU593_RS07160 (QU593_07160) - 1449398..1451590 (+) 2193 WP_148984615.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QU593_RS07165 (QU593_07165) dtd 1451605..1452042 (+) 438 WP_056535151.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88437.09 Da        Isoelectric Point: 4.9031

>NTDB_id=849592 QU593_RS07150 WP_290032239.1 1446229..1448589(+) (recJ) [Rossellomorea marisflavi strain SRCM125375]
MLNAKTRWKMKDSDQHKIAELAEELKVPPLVAKLLINRDLADADDARDFLFDTGGSFHDPFLFDDMQKAKERIMLAIEHE
ERILVYGDYDADGVSSTSVLMTVLTDLGAQAEFYIPNRFTEGYGPNEDAFRWAADEGFAVIITVDTGISAVGEAKLAKEL
GIDLILTDHHEPGPELPPVFAMIHPKVEGCSYPFKELAGVGVALKLAHALYGEFPDHLLDLAAIGTIADLVPLHGENRLI
AKKGIARLKVTDRFGIKALCRVANAQQNEMNEETVGFMIAPRINAVGRLGDADPAVDLMLSRDPEEAKALAEEIDSLNKE
RQSIVAKMTEEAVEMVEKEFPPSENGVLVIGKEGWNPGVVGIVASRLVDRFYRPTIVLSFDPDSNKAKGSARSIAGFDLF
KNLSMNRELLPHFGGHPMAAGMTLALSDVDELRSRLNEQAKEVLSEDDFIPVTELDAEVAVDEITVESIEKMQLLAPFGM
NNPKPKWVIRDVSIDHYKKIGSAQNHLKLVLAENGVQVDGVGFGLGELADHMTPYVKASVIGELSINEWNNRKKPQIFLQ
DIQISSWQLFDMRGIKQVTKWAPLIPDGDRMIVCFHPKSADTTLFKGEVRYIQSESDLEGIVVDGCNLVLLDLPGDRRLM
EQLLELGRPHRIYAHFHQHEDHFFSTMPTRDHFKWYYAFLHKRGSFDLKKHGNDLAKYKGWSMETIDFMSKVFFELKFVT
IEDGLISLHPVKVKKDLSESPAYMRKQHQYELENELLYSSYQELKTWFSERMKESAIVEEEVEAWT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=849592 QU593_RS07150 WP_290032239.1 1446229..1448589(+) (recJ) [Rossellomorea marisflavi strain SRCM125375]
ATGTTAAATGCAAAAACACGCTGGAAAATGAAAGATTCTGACCAGCACAAGATAGCAGAATTGGCAGAAGAGTTGAAGGT
TCCCCCGCTTGTTGCGAAATTATTGATAAATCGGGATCTGGCAGATGCCGATGATGCCCGGGACTTTTTATTTGATACAG
GCGGATCGTTTCATGATCCATTTCTTTTTGATGATATGCAAAAAGCGAAAGAGCGCATCATGCTGGCAATCGAGCATGAG
GAGCGCATCCTTGTGTATGGTGACTATGATGCCGACGGAGTAAGTTCCACATCAGTCCTGATGACGGTACTGACAGACCT
TGGGGCACAGGCTGAATTTTATATCCCTAACCGGTTTACAGAAGGATATGGACCGAATGAAGACGCCTTCAGGTGGGCTG
CTGATGAAGGGTTCGCCGTTATCATTACGGTGGATACCGGCATATCCGCAGTGGGAGAAGCCAAGCTTGCCAAAGAACTT
GGTATCGACTTGATCTTAACGGATCACCATGAACCGGGTCCCGAATTGCCGCCAGTCTTCGCGATGATCCACCCGAAGGT
GGAAGGATGCTCCTATCCATTCAAGGAACTGGCAGGGGTCGGGGTGGCTTTGAAGCTGGCTCACGCTCTCTACGGGGAGT
TTCCCGACCATCTGCTGGATTTGGCCGCAATCGGTACGATCGCCGATCTGGTTCCCCTCCATGGGGAGAACCGGCTGATC
GCCAAGAAGGGGATCGCCAGGCTGAAGGTAACGGACCGCTTTGGGATCAAGGCCCTGTGCCGTGTGGCGAATGCCCAGCA
AAATGAGATGAATGAAGAGACCGTTGGATTCATGATTGCACCGAGGATCAATGCCGTCGGCAGGCTGGGTGATGCCGATC
CCGCAGTGGATCTCATGCTTTCCCGTGATCCGGAAGAAGCAAAGGCACTCGCAGAAGAGATTGACAGCTTGAACAAAGAG
CGCCAATCCATCGTAGCGAAAATGACGGAAGAAGCTGTAGAGATGGTGGAGAAGGAATTCCCTCCATCTGAAAACGGTGT
TCTTGTCATCGGGAAGGAAGGCTGGAACCCTGGGGTAGTGGGAATCGTTGCTTCCCGTCTCGTCGACAGGTTTTACCGTC
CGACCATTGTCCTTAGTTTCGATCCTGATTCGAATAAAGCGAAAGGTTCGGCTAGAAGCATTGCCGGGTTCGATCTGTTC
AAGAATCTCTCCATGAATCGTGAACTCCTTCCCCATTTCGGGGGGCATCCGATGGCTGCGGGAATGACCCTTGCCCTATC
CGATGTCGATGAGCTCCGTTCAAGATTGAATGAACAGGCAAAAGAAGTCCTGAGCGAAGACGATTTCATCCCGGTTACAG
AGCTCGATGCCGAAGTCGCCGTGGACGAGATCACCGTTGAATCCATCGAGAAAATGCAGCTCCTTGCGCCATTCGGGATG
AACAACCCGAAGCCGAAGTGGGTCATACGGGATGTATCGATCGATCATTATAAAAAGATCGGTTCCGCTCAGAATCACCT
TAAGCTTGTCCTAGCCGAAAACGGTGTACAAGTGGATGGGGTTGGGTTCGGCCTCGGTGAACTTGCCGATCACATGACGC
CTTATGTAAAAGCTTCCGTTATCGGAGAACTGTCGATTAATGAATGGAATAATCGCAAGAAGCCTCAGATCTTCCTGCAG
GATATCCAGATTTCGTCCTGGCAGCTTTTCGATATGAGGGGGATCAAGCAGGTGACGAAATGGGCCCCTCTCATTCCTGA
TGGTGACAGGATGATCGTATGCTTCCATCCGAAATCGGCGGATACAACGCTGTTCAAAGGGGAAGTCCGGTACATCCAGA
GTGAATCCGATCTTGAAGGGATCGTGGTGGATGGATGCAATCTCGTACTCCTCGATCTCCCTGGGGACCGTCGACTGATG
GAGCAGCTTCTTGAACTCGGCAGGCCGCATCGCATCTATGCCCATTTCCACCAGCATGAAGACCATTTCTTCAGTACGAT
GCCCACCCGTGATCATTTCAAATGGTATTATGCCTTCCTTCATAAGAGGGGTTCATTCGATCTGAAGAAACACGGAAATG
ACCTTGCCAAGTACAAGGGGTGGTCCATGGAAACAATCGATTTCATGTCAAAGGTGTTTTTTGAATTGAAGTTTGTTACA
ATAGAAGATGGTTTGATTTCTCTTCATCCTGTCAAAGTGAAGAAAGACCTGTCCGAATCTCCGGCCTACATGAGGAAGCA
GCATCAGTACGAGCTTGAAAATGAGCTCCTGTATTCGTCATATCAGGAACTGAAGACATGGTTCAGCGAAAGGATGAAAG
AGTCCGCTATAGTTGAGGAGGAAGTAGAAGCATGGACTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(305-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-768)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.826

99.364

0.555