Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | QRA04_RS08300 | Genome accession | NZ_CP128608 |
| Coordinates | 1567430..1568209 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus tropicus strain PUMB_55 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1549894..1597783 | 1567430..1568209 | within | 0 |
Gene organization within MGE regions
Location: 1549894..1597783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRA04_RS08205 (QRA04_08185) | ftsY | 1549894..1550883 (+) | 990 | WP_226640235.1 | signal recognition particle-docking protein FtsY | - |
| QRA04_RS08210 (QRA04_08190) | - | 1551018..1551350 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| QRA04_RS08215 (QRA04_08195) | ffh | 1551363..1552712 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| QRA04_RS08220 (QRA04_08200) | rpsP | 1552813..1553085 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| QRA04_RS08225 (QRA04_08205) | - | 1553100..1553327 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| QRA04_RS08230 (QRA04_08210) | rimM | 1553448..1553963 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| QRA04_RS08235 (QRA04_08215) | trmD | 1553963..1554697 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QRA04_RS08240 (QRA04_08220) | rplS | 1554844..1555188 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| QRA04_RS08245 (QRA04_08225) | lepB | 1555290..1555841 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| QRA04_RS08250 (QRA04_08230) | ylqF | 1555862..1556752 (+) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| QRA04_RS08255 (QRA04_08235) | rnhB | 1556804..1557577 (+) | 774 | WP_001174717.1 | ribonuclease HII | - |
| QRA04_RS08260 (QRA04_08240) | sucC | 1557771..1558931 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QRA04_RS08265 (QRA04_08245) | sucD | 1558951..1559853 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| QRA04_RS08270 (QRA04_08250) | dprA | 1559941..1560810 (+) | 870 | WP_046198500.1 | DNA-processing protein DprA | - |
| QRA04_RS08275 (QRA04_08255) | topA | 1560955..1563033 (+) | 2079 | WP_001286966.1 | type I DNA topoisomerase | - |
| QRA04_RS08280 (QRA04_08260) | trmFO | 1563084..1564388 (+) | 1305 | WP_242276160.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QRA04_RS08285 (QRA04_08265) | xerC | 1564454..1565353 (+) | 900 | WP_226640238.1 | tyrosine recombinase XerC | - |
| QRA04_RS08290 (QRA04_08270) | hslV | 1565396..1565938 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| QRA04_RS08295 (QRA04_08275) | hslU | 1565961..1567352 (+) | 1392 | WP_000550082.1 | ATP-dependent protease ATPase subunit HslU | - |
| QRA04_RS08300 (QRA04_08280) | codY | 1567430..1568209 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| QRA04_RS08305 (QRA04_08285) | rpsB | 1568560..1569261 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| QRA04_RS08310 (QRA04_08290) | tsf | 1569365..1570252 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| QRA04_RS08315 (QRA04_08295) | pyrH | 1570319..1571041 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| QRA04_RS08320 (QRA04_08300) | frr | 1571044..1571601 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| QRA04_RS08325 (QRA04_08305) | uppS | 1571687..1572463 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| QRA04_RS08330 (QRA04_08310) | cdsA | 1572481..1573272 (+) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| QRA04_RS08335 (QRA04_08315) | dxr | 1573296..1574438 (+) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| QRA04_RS08340 (QRA04_08320) | rseP | 1574455..1575711 (+) | 1257 | WP_001090249.1 | RIP metalloprotease RseP | - |
| QRA04_RS08345 (QRA04_08325) | - | 1575821..1577521 (+) | 1701 | WP_410490822.1 | proline--tRNA ligase | - |
| QRA04_RS08350 (QRA04_08330) | - | 1577646..1581947 (+) | 4302 | WP_242276158.1 | PolC-type DNA polymerase III | - |
| QRA04_RS08355 (QRA04_08335) | rimP | 1582280..1582750 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| QRA04_RS08360 (QRA04_08340) | nusA | 1582768..1583874 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| QRA04_RS08365 (QRA04_08345) | rnpM | 1583886..1584158 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| QRA04_RS08370 (QRA04_08350) | - | 1584159..1584470 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| QRA04_RS08375 (QRA04_08355) | infB | 1584475..1586535 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| QRA04_RS08380 (QRA04_08360) | - | 1586532..1586813 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| QRA04_RS08385 (QRA04_08365) | rbfA | 1586829..1587185 (+) | 357 | WP_000776445.1 | 30S ribosome-binding factor RbfA | - |
| QRA04_RS08390 (QRA04_08370) | truB | 1587272..1588195 (+) | 924 | WP_002194816.1 | tRNA pseudouridine(55) synthase TruB | - |
| QRA04_RS08395 (QRA04_08375) | ribF | 1588239..1589210 (+) | 972 | WP_000766719.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| QRA04_RS08400 (QRA04_08380) | rpsO | 1589311..1589580 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| QRA04_RS08405 (QRA04_08385) | pnp | 1589741..1591879 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| QRA04_RS08410 (QRA04_08390) | - | 1592031..1592930 (+) | 900 | WP_410490823.1 | polysaccharide deacetylase family protein | - |
| QRA04_RS08415 (QRA04_08395) | - | 1593017..1594258 (+) | 1242 | WP_000592994.1 | M16 family metallopeptidase | - |
| QRA04_RS08420 (QRA04_08400) | - | 1594389..1594640 (+) | 252 | WP_001239749.1 | YlmC/YmxH family sporulation protein | - |
| QRA04_RS08425 (QRA04_08405) | dpaA | 1594879..1595781 (+) | 903 | WP_087996537.1 | dipicolinic acid synthetase subunit A | - |
| QRA04_RS08430 (QRA04_08410) | dpaB | 1595778..1596203 (+) | 426 | Protein_1646 | dipicolinate synthase subunit B | - |
| QRA04_RS08435 (QRA04_08415) | - | 1596236..1597783 (-) | 1548 | WP_410490824.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=849285 QRA04_RS08300 WP_000421288.1 1567430..1568209(+) (codY) [Bacillus tropicus strain PUMB_55]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=849285 QRA04_RS08300 WP_000421288.1 1567430..1568209(+) (codY) [Bacillus tropicus strain PUMB_55]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |