Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QTL84_RS08555 Genome accession   NZ_CP128559
Coordinates   1663110..1663889 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SH-1471     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658110..1668889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL84_RS08535 trmFO 1658797..1660104 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QTL84_RS08540 xerC 1660174..1661091 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QTL84_RS08545 hslV 1661107..1661652 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  QTL84_RS08550 hslU 1661660..1663072 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  QTL84_RS08555 codY 1663110..1663889 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QTL84_RS08560 flgB 1664243..1664632 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QTL84_RS08565 flgC 1664632..1665084 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  QTL84_RS08570 fliE 1665095..1665415 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QTL84_RS08575 fliF 1665458..1667068 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  QTL84_RS08580 fliG 1667081..1668097 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QTL84_RS08585 fliH 1668090..1668845 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=848981 QTL84_RS08555 WP_003154263.1 1663110..1663889(+) (codY) [Bacillus velezensis strain SH-1471]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=848981 QTL84_RS08555 WP_003154263.1 1663110..1663889(+) (codY) [Bacillus velezensis strain SH-1471]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471