Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QTN52_RS08430 Genome accession   NZ_CP128551
Coordinates   1723800..1724579 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM123441     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718800..1729579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS08410 (QTN52_08410) trmFO 1719487..1720794 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QTN52_RS08415 (QTN52_08415) xerC 1720864..1721781 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QTN52_RS08420 (QTN52_08420) hslV 1721797..1722342 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QTN52_RS08425 (QTN52_08425) hslU 1722359..1723762 (+) 1404 WP_017417774.1 HslU--HslV peptidase ATPase subunit -
  QTN52_RS08430 (QTN52_08430) codY 1723800..1724579 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QTN52_RS08435 (QTN52_08435) flgB 1724933..1725322 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QTN52_RS08440 (QTN52_08440) flgC 1725322..1725774 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  QTN52_RS08445 (QTN52_08445) fliE 1725785..1726105 (+) 321 WP_017417776.1 flagellar hook-basal body complex protein FliE -
  QTN52_RS08450 (QTN52_08450) fliF 1726148..1727758 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  QTN52_RS08455 (QTN52_08455) fliG 1727771..1728787 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QTN52_RS08460 (QTN52_08460) fliH 1728780..1729535 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=848846 QTN52_RS08430 WP_003154263.1 1723800..1724579(+) (codY) [Bacillus velezensis strain SRCM123441]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=848846 QTN52_RS08430 WP_003154263.1 1723800..1724579(+) (codY) [Bacillus velezensis strain SRCM123441]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471