Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   V5G23_RS21975 Genome accession   NZ_CP144925
Coordinates   4201383..4201832 (-) Length   149 a.a.
NCBI ID   WP_003181503.1    Uniprot ID   Q65K02
Organism   Bacillus licheniformis strain CP13     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 4196383..4206832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS21945 (V5G23_21945) - 4197118..4198140 (-) 1023 WP_080618631.1 SepM family pheromone-processing serine protease -
  V5G23_RS21950 (V5G23_21950) ylbJ 4198464..4199684 (+) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  V5G23_RS21955 (V5G23_21955) coaD 4199693..4200187 (-) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  V5G23_RS21960 (V5G23_21960) rsmD 4200180..4200746 (-) 567 WP_003181507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V5G23_RS21965 (V5G23_21965) - 4200795..4200929 (-) 135 WP_254926361.1 hypothetical protein -
  V5G23_RS21970 (V5G23_21970) - 4201039..4201311 (-) 273 WP_009328559.1 YlbG family protein -
  V5G23_RS21975 (V5G23_21975) ylbF 4201383..4201832 (-) 450 WP_003181503.1 YlbF family regulator Regulator
  V5G23_RS21980 (V5G23_21980) - 4202110..4202349 (-) 240 WP_003181501.1 YlbE-like family protein -
  V5G23_RS21985 (V5G23_21985) - 4202364..4202759 (-) 396 WP_094023900.1 YlbD family protein -
  V5G23_RS21990 (V5G23_21990) - 4202913..4203956 (-) 1044 WP_061578496.1 CAP domain-containing protein -
  V5G23_RS21995 (V5G23_21995) - 4204097..4204543 (-) 447 WP_003181494.1 CBS domain-containing protein -
  V5G23_RS22000 (V5G23_22000) - 4204711..4205070 (+) 360 WP_003181492.1 YugN family protein -
  V5G23_RS22005 (V5G23_22005) ctaG 4205127..4206026 (-) 900 WP_011197954.1 cytochrome c oxidase assembly factor CtaG -
  V5G23_RS22010 (V5G23_22010) ctaF 4206060..4206389 (-) 330 WP_003181487.1 cytochrome c oxidase subunit IVB -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16903.11 Da        Isoelectric Point: 6.3347

>NTDB_id=848207 V5G23_RS21975 WP_003181503.1 4201383..4201832(-) (ylbF) [Bacillus licheniformis strain CP13]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEISKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=848207 V5G23_RS21975 WP_003181503.1 4201383..4201832(-) (ylbF) [Bacillus licheniformis strain CP13]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTATAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATATCCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATCTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65K02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

84.564

100

0.846