Detailed information NTG0848015

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: V5G22_RS14895
• Genome accession: NZ_CP144920
• Coordinates: 2929880..2931145 (-)
• Length: 421 a.a.
• NCBI ID: WP_011198157.1
• Uniprot ID: Q65GR6
• Organism: Bacillus licheniformis strain CP26
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2924880..2936145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5G22_RS14870 (V5G22_14870)	-	2925009..2925173 (+)	165	WP_003183953.1	YrzK family protein	-
V5G22_RS14875 (V5G22_14875)	hisS	2925548..2926822 (+)	1275	WP_003183951.1	histidine--tRNA ligase	-
V5G22_RS14880 (V5G22_14880)	aspS	2926837..2928615 (+)	1779	WP_003183949.1	aspartate--tRNA ligase	-
V5G22_RS14890 (V5G22_14890)	-	2929035..2929799 (+)	765	WP_003183947.1	tRNA threonylcarbamoyladenosine dehydratase	-
V5G22_RS14895 (V5G22_14895)	rarA	2929880..2931145 (-)	1266	WP_011198157.1	replication-associated recombination protein A	Machinery gene
V5G22_RS14900 (V5G22_14900)	cymR	2931655..2932071 (+)	417	WP_009327777.1	cysteine metabolism transcriptional regulator CymR	-
V5G22_RS14905 (V5G22_14905)	-	2932092..2933231 (+)	1140	WP_016885536.1	cysteine desulfurase family protein	-
V5G22_RS14910 (V5G22_14910)	mnmA	2933327..2934445 (+)	1119	WP_016885535.1	tRNA 2-thiouridine(34) synthase MnmA	-
V5G22_RS14915 (V5G22_14915)	-	2934540..2935190 (+)	651	WP_145679184.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46344.32 Da
• Isoelectric Point: 7.6230

>NTDB_id=848015 V5G22_RS14895 WP_011198157.1 2929880..2931145(-) (rarA) [Bacillus licheniformis strain CP26]
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
AIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIIMIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKR
ALEDKHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHYKGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQP
KQTGKFELALKQVYDKLMKQK

Nucleotide

• Length: 1266 bp

>NTDB_id=848015 V5G22_RS14895 WP_011198157.1 2929880..2931145(-) (rarA) [Bacillus licheniformis strain CP26]
ATGAAACCACTCGCATTTCGAATGCGCCCTACAAAAATCGAAGAGGTTCTCGGCCAGGATCACCTGGTCGGGGAAGGAAA
GATCATTCATCGGATGGTGCAGGCCAAACACCTTTCATCGATGATTCTGTACGGCCCCCCGGGCATCGGCAAAACGTCGA
TCGCCACGGCGATTGCCGGCAGCACGAGCATCGCTTTCCGAAAGCTGAACGCAGTCATCAATAATAAAAAGGATATGGAA
GCCATTGCCGCCGAAGCAAAAATGTCGGGGCAGGTTATCTTAATCCTTGATGAGGTGCACCGGCTTGACAAAGGCAAGCA
GGACTTTCTCCTTCCGTATTTGGAAAACGGCATGATTATCATGATCGGGGCGACGACAGCCAACCCGTACCATGCGATCA
ATCCGGCGATCAGAAGCAGAACGCAGATTTTCGAGCTGCATCCGTTAGACCCTGAACAAATCAAAACGGCCATTAAACGG
GCGCTTGAAGATAAACACAGAGGCCTCGGTTCGTATGACGTTGCCGTCGATGATGAGGCGCTTGACCATTTGGCCCGCGG
CTGCGGCGGAGATGTCCGCTCAGCTTTGAATGCGCTCGAACTTGCCGTATTGTCCACAAAGGAAAACAGTGAGGGAGCGA
TACGCATTACATTGGAAATCGCAGAAGAATGCCTGCAGAAAAAAAGCTTTGTCCATGACAAAGATGGAGACGCGCATTAT
GATGTCATTTCCGCCTTCCAAAAATCAATCAGAGGCTCTGATGTCAATGCTGCACTGCACTACATGGCAAGGCTTATTGA
AGCGGGGGATTTGGAAAGCCTTGCACGGAGGCTGCTTGTTATCGCCTATGAGGATGTCGGGCTGGCGAGTCCGCAGGCTG
GTGGAAGAACGCTTCAAGCCATTCAAACGGCGGAACGAATCGGATTTCCGGAAGCGAGGATTCCGCTGGCCAACGCCGTG
ATTGAGCTCTGCCTGTCTCCTAAATCGAACTCGGCGATCCTTGCAGTTGACGAAGCGCTGTCAGACGTCCGCTCCGGAAA
GATCGGCGATGTGCCGAACCATTTAAAGGACGCCCATTACAAAGGAGCCGCTGAGCTTGGCAGAGGTGTGGAATACAAAT
ATCCGCACGATTACGAGAACGGCTGGGTCAAACAGCAGTACCTGCCTGATCCGCTGAAAAACAAAGTTTACTATCAGCCG
AAGCAGACGGGAAAATTTGAACTCGCACTGAAACAAGTATACGACAAGCTGATGAAACAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-127)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

3D structure

• AlphaFold DB: Q65GR6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	85.748	100	0.857