Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QTN49_RS11595 Genome accession   NZ_CP128504
Coordinates   2338803..2339582 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM123434     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333803..2344582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS11565 (QTN49_11565) fliH 2333847..2334602 (-) 756 WP_063636636.1 flagellar assembly protein FliH -
  QTN49_RS11570 (QTN49_11570) fliG 2334595..2335611 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QTN49_RS11575 (QTN49_11575) fliF 2335624..2337234 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  QTN49_RS11580 (QTN49_11580) fliE 2337277..2337597 (-) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  QTN49_RS11585 (QTN49_11585) flgC 2337608..2338060 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  QTN49_RS11590 (QTN49_11590) flgB 2338060..2338449 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QTN49_RS11595 (QTN49_11595) codY 2338803..2339582 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QTN49_RS11600 (QTN49_11600) hslU 2339620..2341023 (-) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  QTN49_RS11605 (QTN49_11605) hslV 2341040..2341585 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QTN49_RS11610 (QTN49_11610) xerC 2341601..2342518 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  QTN49_RS11615 (QTN49_11615) trmFO 2342588..2343895 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=848007 QTN49_RS11595 WP_003154263.1 2338803..2339582(-) (codY) [Bacillus velezensis strain SRCM123434]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=848007 QTN49_RS11595 WP_003154263.1 2338803..2339582(-) (codY) [Bacillus velezensis strain SRCM123434]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471