Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QTN48_RS13040 Genome accession   NZ_CP128503
Coordinates   2521920..2522699 (-) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain SRCM123422     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516920..2527699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS13010 (QTN48_13010) fliH 2516964..2517719 (-) 756 WP_017417778.1 flagellar assembly protein FliH -
  QTN48_RS13015 (QTN48_13015) fliG 2517712..2518728 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QTN48_RS13020 (QTN48_13020) fliF 2518741..2520351 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  QTN48_RS13025 (QTN48_13025) fliE 2520394..2520714 (-) 321 WP_017417776.1 flagellar hook-basal body complex protein FliE -
  QTN48_RS13030 (QTN48_13030) flgC 2520725..2521177 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  QTN48_RS13035 (QTN48_13035) flgB 2521177..2521566 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QTN48_RS13040 (QTN48_13040) codY 2521920..2522699 (-) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QTN48_RS13045 (QTN48_13045) hslU 2522737..2524140 (-) 1404 WP_017417774.1 HslU--HslV peptidase ATPase subunit -
  QTN48_RS13050 (QTN48_13050) hslV 2524157..2524702 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QTN48_RS13055 (QTN48_13055) xerC 2524718..2525635 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  QTN48_RS13060 (QTN48_13060) trmFO 2525705..2527012 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=847931 QTN48_RS13040 WP_017417775.1 2521920..2522699(-) (codY) [Bacillus velezensis strain SRCM123422]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=847931 QTN48_RS13040 WP_017417775.1 2521920..2522699(-) (codY) [Bacillus velezensis strain SRCM123422]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471