Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QTN45_RS11445 Genome accession   NZ_CP128500
Coordinates   2252666..2253445 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247666..2258445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS11415 (QTN45_11415) fliH 2247710..2248465 (-) 756 WP_013352257.1 flagellar assembly protein FliH -
  QTN45_RS11420 (QTN45_11420) fliG 2248458..2249474 (-) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  QTN45_RS11425 (QTN45_11425) fliF 2249487..2251097 (-) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  QTN45_RS11430 (QTN45_11430) fliE 2251140..2251460 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QTN45_RS11435 (QTN45_11435) flgC 2251471..2251923 (-) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  QTN45_RS11440 (QTN45_11440) flgB 2251923..2252312 (-) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  QTN45_RS11445 (QTN45_11445) codY 2252666..2253445 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QTN45_RS11450 (QTN45_11450) hslU 2253483..2254886 (-) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  QTN45_RS11455 (QTN45_11455) hslV 2254903..2255448 (-) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  QTN45_RS11460 (QTN45_11460) xerC 2255464..2256381 (-) 918 WP_013352249.1 tyrosine recombinase XerC -
  QTN45_RS11465 (QTN45_11465) trmFO 2256451..2257758 (-) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=847781 QTN45_RS11445 WP_013352252.1 2252666..2253445(-) (codY) [Bacillus amyloliquefaciens strain SRCM123364]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=847781 QTN45_RS11445 WP_013352252.1 2252666..2253445(-) (codY) [Bacillus amyloliquefaciens strain SRCM123364]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467