Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QTN45_RS07750 Genome accession   NZ_CP128500
Coordinates   1486898..1487935 (+) Length   345 a.a.
NCBI ID   WP_013352871.1    Uniprot ID   A0A9P1JIA4
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481898..1492935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07730 (QTN45_07730) - 1482384..1483211 (+) 828 WP_013352875.1 STAS domain-containing protein -
  QTN45_RS07735 (QTN45_07735) - 1483249..1484550 (-) 1302 WP_013352874.1 hemolysin family protein -
  QTN45_RS07740 (QTN45_07740) - 1484697..1485647 (+) 951 WP_013352873.1 magnesium transporter CorA family protein -
  QTN45_RS07745 (QTN45_07745) comGA 1485841..1486911 (+) 1071 WP_013352872.1 competence type IV pilus ATPase ComGA Machinery gene
  QTN45_RS07750 (QTN45_07750) comGB 1486898..1487935 (+) 1038 WP_013352871.1 competence type IV pilus assembly protein ComGB Machinery gene
  QTN45_RS07755 (QTN45_07755) comGC 1487982..1488248 (+) 267 WP_044051905.1 competence type IV pilus major pilin ComGC Machinery gene
  QTN45_RS07760 (QTN45_07760) comGD 1488238..1488675 (+) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  QTN45_RS07765 (QTN45_07765) comGE 1488659..1488973 (+) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  QTN45_RS07770 (QTN45_07770) comGF 1488978..1489382 (+) 405 WP_289413132.1 competence type IV pilus minor pilin ComGF -
  QTN45_RS07775 (QTN45_07775) comGG 1489384..1489761 (+) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  QTN45_RS07780 (QTN45_07780) - 1489815..1489994 (+) 180 WP_013352866.1 YqzE family protein -
  QTN45_RS07785 (QTN45_07785) - 1490035..1490364 (-) 330 WP_013352865.1 DUF3889 domain-containing protein -
  QTN45_RS07790 (QTN45_07790) tapA 1490622..1491293 (+) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  QTN45_RS07795 (QTN45_07795) sipW 1491265..1491849 (+) 585 WP_013352863.1 signal peptidase I SipW -
  QTN45_RS07800 (QTN45_07800) tasA 1491914..1492699 (+) 786 WP_013352862.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39644.94 Da        Isoelectric Point: 9.4989

>NTDB_id=847768 QTN45_RS07750 WP_013352871.1 1486898..1487935(+) (comGB) [Bacillus amyloliquefaciens strain SRCM123364]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=847768 QTN45_RS07750 WP_013352871.1 1486898..1487935(+) (comGB) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATTC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAGATGCTTATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACTGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAGGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAATGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

66.873

93.623

0.626