Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V4U93_RS05905 Genome accession   NZ_CP144755
Coordinates   1182069..1183832 (-) Length   587 a.a.
NCBI ID   WP_061826978.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177069..1188832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS05885 (V4U93_05885) - 1177863..1178840 (-) 978 WP_041820853.1 alpha-ketoacid dehydrogenase subunit beta -
  V4U93_RS05890 (V4U93_05890) pdhA 1178842..1179951 (-) 1110 WP_338453480.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  V4U93_RS05895 (V4U93_05895) - 1180274..1180957 (-) 684 WP_011374786.1 hypothetical protein -
  V4U93_RS05900 (V4U93_05900) def 1181463..1182020 (+) 558 WP_011374787.1 peptide deformylase -
  V4U93_RS05905 (V4U93_05905) rcrQ 1182069..1183832 (-) 1764 WP_061826978.1 ABC transporter ATP-binding protein Regulator
  V4U93_RS05910 (V4U93_05910) rcrP 1183819..1185558 (-) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  V4U93_RS05915 (V4U93_05915) - 1185586..1186071 (-) 486 WP_016265231.1 hypothetical protein -
  V4U93_RS05920 (V4U93_05920) - 1186268..1186480 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  V4U93_RS05925 (V4U93_05925) - 1186485..1188173 (+) 1689 WP_016265232.1 ribonuclease J -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65100.65 Da        Isoelectric Point: 6.2489

>NTDB_id=847726 V4U93_RS05905 WP_061826978.1 1182069..1183832(-) (rcrQ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVIMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=847726 V4U93_RS05905 WP_061826978.1 1182069..1183832(-) (rcrQ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCGTTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTCATCGCGATGATTCTCAGCTTTGCGTTACTTTATCAAACA
ATGATGTTTTTGGGATCGTTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATTCAAGTTGTGACCTCAATTTTGGGAATCATTATGGCGGTTATCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCGGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAGGTTTACTTCCAGGGGCAACAAAATACCTTGGGTGAAATGAATGGTTATGTTCAGGAAAACTACGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTCTAACCACTAATCTAACCTATGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGGGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATTACGCAGTTATCTGGTGTCATGCAAGCGGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGACGTTCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCATTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGTGATAAAATTG
CGATTGTTGGGCCAACCGGTGCTGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTTAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACACGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.027

100

0.431