Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | V4U93_RS04655 | Genome accession | NZ_CP144755 |
| Coordinates | 918864..920144 (-) | Length | 426 a.a. |
| NCBI ID | WP_011374543.1 | Uniprot ID | Q38XE0 |
| Organism | Latilactobacillus sakei subsp. sakei strain DCF0720 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 913864..925144
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4U93_RS04625 (V4U93_04625) | - | 914101..914703 (-) | 603 | WP_016265012.1 | nitroreductase family protein | - |
| V4U93_RS04630 (V4U93_04630) | - | 915031..916005 (+) | 975 | WP_016265013.1 | DUF2785 domain-containing protein | - |
| V4U93_RS04635 (V4U93_04635) | - | 916032..916682 (+) | 651 | WP_016265014.1 | HAD family phosphatase | - |
| V4U93_RS04640 (V4U93_04640) | - | 916822..917676 (+) | 855 | WP_025015819.1 | helix-turn-helix transcriptional regulator | - |
| V4U93_RS04645 (V4U93_04645) | - | 917717..918211 (-) | 495 | WP_011374541.1 | universal stress protein | - |
| V4U93_RS04650 (V4U93_04650) | - | 918274..918549 (-) | 276 | WP_016265016.1 | hypothetical protein | - |
| V4U93_RS04655 (V4U93_04655) | rarA | 918864..920144 (-) | 1281 | WP_011374543.1 | replication-associated recombination protein A | Machinery gene |
| V4U93_RS04660 (V4U93_04660) | gshAB | 920277..922556 (+) | 2280 | WP_025015818.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| V4U93_RS04665 (V4U93_04665) | - | 922611..923054 (-) | 444 | WP_016265018.1 | YueI family protein | - |
| V4U93_RS04670 (V4U93_04670) | - | 923125..923730 (+) | 606 | WP_016265019.1 | DUF1054 domain-containing protein | - |
| V4U93_RS04675 (V4U93_04675) | rpsD | 923826..924431 (-) | 606 | WP_011374547.1 | 30S ribosomal protein S4 | - |
Sequence
Protein
Download Length: 426 a.a. Molecular weight: 46634.27 Da Isoelectric Point: 6.8680
>NTDB_id=847711 V4U93_RS04655 WP_011374543.1 918864..920144(-) (rarA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
Nucleotide
Download Length: 1281 bp
>NTDB_id=847711 V4U93_RS04655 WP_011374543.1 918864..920144(-) (rarA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGTGCTACCACCGAAAATCCCTACATCACGA
TTAACCCCGCTATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCTCAAAAAGGCTTGGGTGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGCGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTGAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGTGCTACCACCGAAAATCCCTACATCACGA
TTAACCCCGCTATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCTCAAAAAGGCTTGGGTGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGCGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTGAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
66.427 |
97.887 |
0.65 |