Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QSJ10_RS14215 Genome accession   NZ_CP128494
Coordinates   2618225..2618584 (-) Length   119 a.a.
NCBI ID   WP_183084012.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613225..2623584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS14190 (QSJ10_14190) - 2613988..2614209 (-) 222 WP_289493440.1 hypothetical protein -
  QSJ10_RS14195 (QSJ10_14195) - 2614582..2615361 (-) 780 WP_053532859.1 hypothetical protein -
  QSJ10_RS14200 (QSJ10_14200) - 2615407..2616759 (-) 1353 WP_053532858.1 peptidoglycan-binding protein -
  QSJ10_RS14205 (QSJ10_14205) - 2616914..2617423 (-) 510 WP_033013768.1 hypothetical protein -
  QSJ10_RS14210 (QSJ10_14210) - 2617633..2618043 (+) 411 WP_049624694.1 helix-turn-helix domain-containing protein -
  QSJ10_RS14215 (QSJ10_14215) ssbB 2618225..2618584 (-) 360 WP_183084012.1 single-stranded DNA-binding protein Machinery gene
  QSJ10_RS14220 (QSJ10_14220) - 2618856..2619293 (+) 438 WP_033013755.1 YwpF-like family protein -
  QSJ10_RS14225 (QSJ10_14225) - 2619505..2620167 (-) 663 WP_049625969.1 class D sortase -
  QSJ10_RS14230 (QSJ10_14230) - 2620192..2621118 (-) 927 WP_053532857.1 processed acidic surface protein -
  QSJ10_RS14235 (QSJ10_14235) - 2621499..2622875 (-) 1377 WP_049624691.1 aspartate kinase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13490.48 Da        Isoelectric Point: 10.2658

>NTDB_id=847710 QSJ10_RS14215 WP_183084012.1 2618225..2618584(-) (ssbB) [Geobacillus stearothermophilus ATCC 12980]
MRRRMVNQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=847710 QSJ10_RS14215 WP_183084012.1 2618225..2618584(-) (ssbB) [Geobacillus stearothermophilus ATCC 12980]
ATGCGCCGGCGTATGGTCAATCAAGTGGTGCTTGTCGGGCGGTTGACGAAAGACCCGGAGCTCCGTTACACAGCCGAAGG
AGCAGCCGTGACGACCGTCACCTTGGCGGTGGCGAGAAATTTTCGAAACGCGGAAGGAGGGATTGATGCCGATTTCGTTC
CATGCGTCTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.99

86.555

0.58
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.423

87.395

0.563
  ssb Latilactobacillus sakei subsp. sakei 23K

59.048

88.235

0.521
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.524

88.235

0.437
  ssbA Streptococcus mutans UA159

46.667

88.235

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.714

88.235

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

44.762

88.235

0.395
  ssbB/cilA Streptococcus mitis SK321

44.762

88.235

0.395
  ssbB/cilA Streptococcus pneumoniae D39

44.762

88.235

0.395
  ssbB/cilA Streptococcus pneumoniae R6

44.762

88.235

0.395
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37