Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QSJ10_RS10945 Genome accession   NZ_CP128494
Coordinates   2009654..2012020 (-) Length   788 a.a.
NCBI ID   WP_053532221.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004654..2017020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS10920 (QSJ10_10920) ahpC 2005274..2005837 (-) 564 WP_033014786.1 alkyl hydroperoxide reductase subunit C -
  QSJ10_RS10925 (QSJ10_10925) - 2006068..2006241 (-) 174 WP_015375481.1 hypothetical protein -
  QSJ10_RS10930 (QSJ10_10930) dtd 2006322..2006780 (-) 459 WP_053532213.1 D-aminoacyl-tRNA deacylase -
  QSJ10_RS10935 (QSJ10_10935) - 2006804..2009002 (-) 2199 WP_053532214.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QSJ10_RS10940 (QSJ10_10940) - 2009151..2009663 (-) 513 WP_033014788.1 adenine phosphoribosyltransferase -
  QSJ10_RS10945 (QSJ10_10945) recJ 2009654..2012020 (-) 2367 WP_053532221.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QSJ10_RS10950 (QSJ10_10950) - 2012078..2012986 (-) 909 WP_080985658.1 cation diffusion facilitator family transporter -
  QSJ10_RS10955 (QSJ10_10955) secDF 2013124..2015376 (-) 2253 WP_033014789.1 protein translocase subunit SecDF -
  QSJ10_RS10960 (QSJ10_10960) - 2015489..2015776 (-) 288 WP_033014790.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86763.06 Da        Isoelectric Point: 5.8255

>NTDB_id=847700 QSJ10_RS10945 WP_053532221.1 2009654..2012020(-) (recJ) [Geobacillus stearothermophilus ATCC 12980]
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAASFLNPLEQSFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLSTARGLERFAPFGV
GNPRPLVLVEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRSLLERLPKEKRLVVSFRCETGQRPDVAPFRGELYCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGNGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRGLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=847700 QSJ10_RS10945 WP_053532221.1 2009654..2012020(-) (recJ) [Geobacillus stearothermophilus ATCC 12980]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGACGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCGTCGTTTCTCAATCCGCTTG
AGCAATCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGCGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGAATGGATGTCATCGTAACAGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATCCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGAGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTTGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCAATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATCGATGCTTCCTGTTCGATTGCTGAGTTGACGCTGTCGACCGCCCGCGGCCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCGTTGAAGGGGCGTCGGTTGAAACCATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTCGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCACAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTTCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGCGAAACTGGACAGCGCCCGGACGTGGCGCCATTTCGCGGGGAGCTTTATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAACGGGCGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGCGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAGGTGTTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGGTTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAACTTGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.76

98.858

0.522