Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QSJ10_RS10845 Genome accession   NZ_CP128494
Coordinates   1989223..1991583 (-) Length   786 a.a.
NCBI ID   WP_053532220.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984223..1996583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS10820 (QSJ10_10820) alaS 1984237..1986873 (-) 2637 WP_033014758.1 alanine--tRNA ligase -
  QSJ10_RS10825 (QSJ10_10825) - 1987191..1988252 (-) 1062 WP_033014760.1 AI-2E family transporter -
  QSJ10_RS10830 (QSJ10_10830) - 1988371..1988505 (-) 135 WP_013144658.1 YrzQ family protein -
  QSJ10_RS10835 (QSJ10_10835) - 1988517..1988708 (-) 192 WP_008881018.1 hypothetical protein -
  QSJ10_RS10840 (QSJ10_10840) - 1988724..1989197 (-) 474 WP_033014765.1 PRC-barrel domain-containing protein -
  QSJ10_RS10845 (QSJ10_10845) recD2 1989223..1991583 (-) 2361 WP_053532220.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QSJ10_RS10850 (QSJ10_10850) - 1991603..1992265 (-) 663 WP_033014766.1 tetratricopeptide repeat protein -
  QSJ10_RS10855 (QSJ10_10855) mnmA 1992356..1993471 (-) 1116 WP_033014767.1 tRNA 2-thiouridine(34) synthase MnmA -
  QSJ10_RS10860 (QSJ10_10860) - 1993571..1994713 (-) 1143 WP_049626599.1 cysteine desulfurase family protein -
  QSJ10_RS10865 (QSJ10_10865) - 1994741..1995157 (-) 417 WP_011232042.1 Rrf2 family transcriptional regulator -
  QSJ10_RS10870 (QSJ10_10870) - 1995177..1995401 (-) 225 WP_033014772.1 hypothetical protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 86541.15 Da        Isoelectric Point: 5.0910

>NTDB_id=847699 QSJ10_RS10845 WP_053532220.1 1989223..1991583(-) (recD2) [Geobacillus stearothermophilus ATCC 12980]
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVETLGENAIAAILRDPRALERVPKLTKKKAKQLYDALRAHEGL
EQTMIALAQLGFGPQLAMKIYQAYGEEAVDIIHENPYQLVEDIEGIGFGRADEIGRQLGISGSHPARLRAASLFVLEQAC
LQEGHVYLREKELMERIGELLDGRQSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLYFAEKGIVSNIKRLLGQTPPS
AFAESEFLLALGALEEQLGMQYAPQQREAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKQGEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNGMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHEMKRGVVPDDLTAPKADRSFIRCRAGQVVDVVRQI
ADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNPPAEGKRELSVGEIVYRVGDKVLQLVNQPEDNVFNGDIGEI
VAIFYAKENIEKQDLLVVSFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAASFVEVELPFEEANMGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=847699 QSJ10_RS10845 WP_053532220.1 1989223..1991583(-) (recD2) [Geobacillus stearothermophilus ATCC 12980]
TTGCAAGAGCAACAAATCCTCGCCCTTGACGGACGCACGTTCATTAAAGGAGTGTGCTTGGCGGTCATTTTTCATAATGA
GGAAACATTGTACACGGTCGTCCGCGTGCGCGTTGAGGAAACGAACGAAGCGCCCGTTGAGGAGGAAGTCGTCGTCACCG
GCTATTTTCCGCGTTTAAACGAAGGGGACGTCTACATCTTTTACGGACAATTCCGCCAACATCCGCGTTTTGGCCGCCAA
TATGCGGCTAGTCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATTCATTATTTATCGAGCGGTTTGTTTAA
AGGAATCGGCAAAAAAACGGCTGCGGCGATTGTCGAGACGCTCGGCGAAAACGCGATCGCCGCGATTTTGCGCGACCCCA
GGGCGCTAGAGCGTGTGCCGAAGCTGACGAAAAAAAAGGCGAAGCAGCTGTACGATGCGCTTCGCGCCCACGAAGGGCTT
GAGCAAACGATGATCGCCCTCGCCCAGCTCGGTTTTGGCCCGCAGCTGGCCATGAAAATTTACCAAGCGTATGGCGAAGA
AGCGGTTGACATCATCCACGAGAACCCGTACCAGCTCGTTGAGGATATCGAAGGGATCGGCTTTGGCCGCGCTGATGAAA
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTCGTTGTTTGTTCTTGAACAGGCGTGC
TTGCAGGAAGGGCACGTTTATTTGCGCGAAAAAGAGCTGATGGAGCGCATCGGGGAGCTGCTTGACGGAAGGCAAAGCGG
TGCGGTGGATGGACGAGCGATCAGCCAAACGCTTCTGATGTTAAGCGAAGAAGGGAAGCTGATCGCCGAGCAAGGGCGTT
ATTATCTCCCTTCCCTTTACTTCGCCGAGAAAGGGATCGTCTCCAACATTAAGCGGCTGCTCGGGCAGACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTTGAGGAACAGCTTGGCATGCAATATGCCCCCCAGCAAAG
GGAAGCGATCCAACAAGCGCTTTCTTCGCCGCTGTTTATTTTGACCGGCGGTCCGGGAACGGGGAAAACGACGGTCATCA
AAGGCATCGTCGAGCTGTTTGCCGCCCTAAACGGCCTGTCTCTTGACCCGGCTGACTACAAACAAGGCGAGCCGTTTCCG
GTGCTGCTGGCCGCACCGACCGGCCGAGCGGCGAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCGACGATCCACCG
CTTGCTTGGCTGGAATGGGGCGGAAGGGTTCAGCCGCGACGAGAACGAACCGATTTCCGGCAAGCTGCTTGTCATCGATG
AGATGTCGATGGTCGACACGTGGCTCGCCAACCAGCTGTTAAAAGCCGTGCCAAACGGCATGCAAGTCATTTTTGTCGGC
GATGAGGATCAATTGCCATCCGTCGGGCCAGGGCAAGTGCTGAAAGACTTGCTCTCTTCAGGCGTCATTCCGTTCGCTCG
GTTGACCGAGGTGTATCGCCAGGCGGAAGGATCATCGATCATCGAGCTCGCTCATGAGATGAAGCGCGGCGTCGTGCCGG
ACGATTTGACCGCTCCGAAGGCAGACCGTTCATTCATCCGCTGCCGTGCGGGCCAGGTCGTCGATGTCGTGCGGCAAATC
GCGGACAACGCGCGCAAAAAAGGGTTTTCCGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGTGGTCCAGCGGGCAT
TGACCAATTGAACAAAGCGCTTCAAGAGCTGTTCAACCCGCCGGCTGAGGGGAAGCGGGAGCTGTCGGTCGGTGAGATCG
TCTACCGCGTCGGCGATAAGGTGCTGCAGCTCGTCAATCAACCGGAAGACAATGTGTTTAACGGCGACATCGGCGAAATC
GTTGCCATTTTTTACGCCAAAGAAAATATCGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGACGTA
CACACGGCAAGATTTAGGACAAATCACCCATGCGTACTGCTGTTCGGTTCATAAGGCGCAAGGAAGCGAGTTTCCAATCG
TCATTTTGCCCGTCGTCAAAAGCTATTACCGGATGTTGAAACGGAATTTGTTGTATACTGCGGTGACAAGAAGCAAGCAG
TTTCTCGTTTTATGCGGGGAAGAGGAAGCGTTTCGATTCGGCGTCGCAAAACAAAGCGACGGAGCGCGCCAGACGGCGCT
CGCTGAGAAGCTGGCGGGGGCGGCGGCGTCGTTTGTCGAGGTCGAACTGCCGTTTGAAGAGGCGAACATGGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(107-155)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.569

100

0.598