Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   V4U93_RS02025 Genome accession   NZ_CP144755
Coordinates   434529..436892 (+) Length   787 a.a.
NCBI ID   WP_011374102.1    Uniprot ID   Q38YN3
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 429529..441892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS02000 (V4U93_02000) - 431470..431730 (+) 261 WP_011374097.1 IreB family regulatory phosphoprotein -
  V4U93_RS02005 (V4U93_02005) ruvX 431730..432173 (+) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  V4U93_RS02010 (V4U93_02010) - 432223..432534 (+) 312 WP_011374099.1 DUF1292 domain-containing protein -
  V4U93_RS02015 (V4U93_02015) rnhC 432823..433740 (-) 918 WP_011374100.1 ribonuclease HIII -
  V4U93_RS02020 (V4U93_02020) - 433934..434473 (+) 540 WP_016264660.1 CvpA family protein -
  V4U93_RS02025 (V4U93_02025) mutS/mutS2 434529..436892 (+) 2364 WP_011374102.1 endonuclease MutS2 Machinery gene
  V4U93_RS02030 (V4U93_02030) trxA 437032..437343 (+) 312 WP_011374103.1 thioredoxin -
  V4U93_RS02035 (V4U93_02035) - 437544..437693 (+) 150 WP_035144601.1 teichoic acid D-Ala incorporation-associated protein DltX -
  V4U93_RS02040 (V4U93_02040) dltA 437717..439243 (+) 1527 WP_061827229.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  V4U93_RS02045 (V4U93_02045) dltB 439236..440444 (+) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  V4U93_RS02050 (V4U93_02050) dltC 440474..440710 (+) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87608.81 Da        Isoelectric Point: 6.0517

>NTDB_id=847693 V4U93_RS02025 WP_011374102.1 434529..436892(+) (mutS/mutS2) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMTKAKEKANAIVEKAEVKADKVITKLRDMQMNQGAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=847693 V4U93_RS02025 WP_011374102.1 434529..436892(+) (mutS/mutS2) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGCTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGCG
TTGATATCGAACGGTTAAAAGGTGGCATTCCGTTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGGATTGAGATC
GGTGCGATGTTAAACGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGCGCAACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTTGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCACAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCTATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAAGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGTAATGACCGCTACGTGATTCCTGTTAAACAAGAATACCGCGGCCAATTTGGTGGTGTGGTACATG
ATCAAAGTGCCAGTGGTCAAACCTTATTCATGGAACCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAGCAACAAGAAATTGAACGGATTTTGGCGGAATTATCAGAAGCCATCATGCCTGAACGCCACAATATTTTAGC
GAATGCTGAATTATTGGGTCAACTTGATTTCGTAAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAAGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTGACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACGTT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAGGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACCCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTACCTGGTCGGAGTAATGCATTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGTCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGACGAAGGCTAAGGAAAAAGCAAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTGCGTGACATGCAGATGAATCAAGGCGCACAGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAAGTGCTTCAACGGGCTAAGCGGCGTCAAACGCTG
AAAGTTGGGGATGACGTATTGGTCACGTCTTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGACTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCCAACGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTAACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGCGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCCG
CTAATGCTGGTGGGAATGGTGCAACCATTGTGACGTTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.574

100

0.466