Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QN310_RS10390 Genome accession   NZ_CP128411
Coordinates   2061033..2063294 (+) Length   753 a.a.
NCBI ID   WP_289677216.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056033..2068294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS10370 (QN310_10370) - 2057068..2057241 (-) 174 WP_016739245.1 hypothetical protein -
  QN310_RS10375 (QN310_10375) - 2057339..2057758 (+) 420 WP_017247589.1 Rrf2 family transcriptional regulator -
  QN310_RS10380 (QN310_10380) - 2057969..2059114 (+) 1146 WP_289677213.1 cysteine desulfurase family protein -
  QN310_RS10385 (QN310_10385) - 2059286..2060950 (+) 1665 WP_289677214.1 methyl-accepting chemotaxis protein -
  QN310_RS10390 (QN310_10390) recD2 2061033..2063294 (+) 2262 WP_289677216.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QN310_RS10395 (QN310_10395) - 2063369..2063848 (+) 480 WP_087349711.1 PRC-barrel domain-containing protein -
  QN310_RS10400 (QN310_10400) - 2063883..2064089 (+) 207 WP_007717618.1 hypothetical protein -
  QN310_RS10405 (QN310_10405) - 2064117..2064311 (+) 195 WP_289678064.1 hypothetical protein -
  QN310_RS10410 (QN310_10410) - 2064424..2065110 (-) 687 WP_289677217.1 TerC family protein -
  QN310_RS10415 (QN310_10415) - 2065488..2066552 (+) 1065 WP_289677218.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85238.46 Da        Isoelectric Point: 5.0670

>NTDB_id=847365 QN310_RS10390 WP_289677216.1 2061033..2063294(+) (recD2) [Brevibacillus brevis strain HNCS-1]
MDEQQSISLFAETYIRGFVSQEIFYNEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHARFGQQ
YVAKRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKIETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFMLQEAS
YSEGHVYLPVEELCEKTLRLLEECGGHVFSGDDIQLAVEALFVSSKIAWEDERVYLPSLFFAELGLAKRLRHFASRDEFG
TFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPIRGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLLDMIRSGLLPLVQLTEIYRQAEESTIIRLAHDVRKGNVPTDLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEERLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=847365 QN310_RS10390 WP_289677216.1 2061033..2063294(+) (recD2) [Brevibacillus brevis strain HNCS-1]
ATGGATGAGCAGCAGTCAATCTCGCTGTTTGCGGAAACCTACATTCGAGGATTTGTTTCTCAAGAAATTTTTTACAATGA
AGAAACCTGGTACGGAGTTATCCGTCTTAAGATAGAAGAGACTACCGAATCGATTAAAGAATCGGAGGTCATTATTGTCG
GTAATTTTCCTCGCCCGCATCCAGATGAGCTGTACACCTTTTACGGTGAATGGAAAACACATGCTCGTTTTGGACAGCAG
TACGTAGCAAAACGCTATGAACGTGAAACGCCGAAAACATTGGCAGGGGTTGAGCGCTACTTAGCCAGTGGCTTGTTTCA
AGGGATCGGAAAGAAGATGGCCAAACGAATTGTCGAGCAGCTCGGGGTAGATGCGCTGTCGATTATCGCGGACTTCCCAG
AGCGATTGGCTGAGGTACCAGGCATTTCTGAACAACGTGCCAAAACGATCTATGATTCCGTAGTCGAGCATCGCTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCGCTGCGTATTTATCAGACCTACAAGATCGA
AACGATGACAGTGCTAAAGGAAGAGCCTTACCGTTTGATTGAAGATGTCGTAGGAATCGGCTTTAAGCGGGCAGATGATA
TTGCACGAGCAACTGGAATCGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCTCTCTTTATGTTGCAGGAGGCATCG
TATTCGGAAGGACATGTTTATTTGCCTGTGGAGGAGCTTTGTGAAAAAACGCTGCGCCTTCTCGAAGAGTGCGGGGGGCA
CGTCTTTTCTGGAGACGATATTCAACTGGCAGTGGAAGCCCTGTTTGTGTCGAGCAAAATTGCCTGGGAAGATGAGCGGG
TTTATTTGCCCTCGCTTTTTTTTGCCGAGCTTGGTCTAGCTAAAAGACTGCGTCACTTCGCATCACGGGATGAATTCGGT
ACGTTTCCGACATCGGAATTTTACCGTGCGTTAGGGGCGGTTGAGGATGAGCTGGGGATTACGTATGCTCAGACGCAGCG
TGATGCCATTGAACAGGCGATCAAAGCAGGTTTGATGCTGTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GCGGGATATGTCGTGTCTTTTCTCAGCTTCATGGATTGTCGCTGGACTTGAAAAAATACAACGAGGAAAATCCATTCCCG
ATCGTTCTTGTGGCTCCTACCGGACGCGCAGCAAAACGTATGACAGAGACTACGGGTTTACCTGCAATGACCATCCATCG
CTTGCTCGGTTATAAAGGTGAGAGCTTCGAGCATGACGCGGAGCATCCAATCCGTGGTCGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGCTTGCCAATCAATTGTTTCGTGCGGTCCCAGACGACATGCAGATCATCATGGTAGGTGAC
CCTGACCAGTTGCCTTCCGTAGGACCGGGGAATGTTCTGTTAGATATGATCCGATCCGGATTGCTTCCGTTGGTACAGCT
GACAGAAATTTATCGGCAGGCAGAAGAGTCTACCATTATTCGGTTGGCCCATGATGTACGCAAGGGGAATGTACCGACAG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCGGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGTGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACGCCGCAAAAGCGTGAAGTTACTTTTGGAGAGACGACTT
TCCGTACAGGAGACAAGGTTCTGCAATTGGTGAACAATGCTGAAGAACAGGTGTTTAACGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCCTTTGATAACAGGGAAGTGGTGTACAA
GCGTTCGGATTACCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGTAGTGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAAAGTTACTACCGTATGCTCAGACGCAAGTTGGTCTATACCGGGATCACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGTGCTGCTGTAGAGTCTGATGAGGAAGGGGTACGGTACAGTTATCTGGA
GGAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(342-536)

Helix-hairpin-helix domain (HHH_5)

(107-152)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.064

99.336

0.487