Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QSV38_RS10170 Genome accession   NZ_CP128410
Coordinates   1959381..1960220 (+) Length   279 a.a.
NCBI ID   WP_274503965.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1954381..1965220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS10145 (QSV38_10145) - 1955606..1956343 (+) 738 WP_289648703.1 HAD family hydrolase -
  QSV38_RS10150 (QSV38_10150) ugpC 1956344..1957450 (+) 1107 WP_289648704.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  QSV38_RS10155 (QSV38_10155) - 1957634..1957861 (+) 228 WP_289648705.1 DUF1146 family protein -
  QSV38_RS10160 (QSV38_10160) murA 1957884..1959167 (+) 1284 WP_289648706.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QSV38_RS10165 (QSV38_10165) - 1959160..1959351 (+) 192 WP_130554299.1 DNA-directed RNA polymerase subunit beta -
  QSV38_RS10170 (QSV38_10170) endA 1959381..1960220 (+) 840 WP_274503965.1 DNA/RNA non-specific endonuclease Machinery gene
  QSV38_RS10175 (QSV38_10175) pheS 1960472..1961515 (+) 1044 WP_289648707.1 phenylalanine--tRNA ligase subunit alpha -
  QSV38_RS10180 (QSV38_10180) - 1962160..1962681 (+) 522 WP_289648708.1 GNAT family N-acetyltransferase -
  QSV38_RS10185 (QSV38_10185) pheT 1962683..1965082 (+) 2400 WP_274503963.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30111.36 Da        Isoelectric Point: 6.4998

>NTDB_id=847347 QSV38_RS10170 WP_274503965.1 1959381..1960220(+) (endA) [Streptococcus parasuis strain 7500]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=847347 QSV38_RS10170 WP_274503965.1 1959381..1960220(+) (endA) [Streptococcus parasuis strain 7500]
ATGGCGAAGAAAAACGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTGCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACAGGTAATGGACGTACGTCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.882

91.398

0.602
  endA Streptococcus pneumoniae D39

65.882

91.398

0.602
  endA Streptococcus pneumoniae R6

65.882

91.398

0.602
  endA Streptococcus pneumoniae TIGR4

65.882

91.398

0.602