Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V4943_RS03635 Genome accession   NZ_CP144685
Coordinates   693385..694002 (-) Length   205 a.a.
NCBI ID   WP_011173147.1    Uniprot ID   Q72JR2
Organism   Thermus thermophilus strain HB27_delta_csm3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 688385..699002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4943_RS03620 (V4943_03620) - 690204..691238 (+) 1035 WP_011173145.1 Xaa-Pro peptidase family protein -
  V4943_RS03625 (V4943_03625) - 691262..692116 (+) 855 WP_008632489.1 permease-like cell division protein FtsX -
  V4943_RS03630 (V4943_03630) - 692118..693353 (+) 1236 WP_011173146.1 peptidoglycan DD-metalloendopeptidase family protein -
  V4943_RS03635 (V4943_03635) comF 693385..694002 (-) 618 WP_011173147.1 ComF family protein Machinery gene
  V4943_RS03640 (V4943_03640) mtnA 693983..694975 (-) 993 WP_011173148.1 S-methyl-5-thioribose-1-phosphate isomerase -
  V4943_RS03645 (V4943_03645) rpmE 695030..695245 (-) 216 WP_008632496.1 50S ribosomal protein L31 -
  V4943_RS03650 (V4943_03650) - 695331..695510 (-) 180 WP_011173149.1 hypothetical protein -
  V4943_RS03660 (V4943_03660) mraZ 696110..696544 (+) 435 WP_008632499.1 division/cell wall cluster transcriptional repressor MraZ -
  V4943_RS03665 (V4943_03665) rsmH 696541..697398 (+) 858 WP_011173150.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  V4943_RS03670 (V4943_03670) - 697395..697640 (+) 246 WP_011173151.1 hypothetical protein -
  V4943_RS03675 (V4943_03675) - 697637..698956 (+) 1320 WP_011173152.1 penicillin-binding protein 2 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22154.94 Da        Isoelectric Point: 11.1756

>NTDB_id=847321 V4943_RS03635 WP_011173147.1 693385..694002(-) (comF) [Thermus thermophilus strain HB27_delta_csm3]
MPWGWIEALLGHACPGCGGPLDLPALCGRCRAGLEAFSTGEMVYLGHYARVGPLVRALKYGRREALARALAEPLARAVAA
RGWRLQGVTAVPTLPHRLALRGYNPPEVLARALAGALGVPYRPVLFRRRYTPGQPTRGLKERRFLPGDLFGARVRVEGAW
LLVDDVLTSGATFLRARGALLEAGAAHVYGAFLAVRDPRALGPYR

Nucleotide


Download         Length: 618 bp        

>NTDB_id=847321 V4943_RS03635 WP_011173147.1 693385..694002(-) (comF) [Thermus thermophilus strain HB27_delta_csm3]
GTGCCTTGGGGCTGGATTGAAGCCTTGCTGGGCCACGCCTGCCCGGGGTGCGGGGGGCCCTTGGACCTTCCCGCCCTCTG
CGGGCGTTGCCGGGCGGGCCTCGAGGCCTTCTCCACGGGGGAGATGGTTTACCTGGGCCACTACGCCCGGGTGGGCCCCT
TGGTGCGGGCGCTGAAGTACGGGAGACGGGAGGCCTTGGCCCGGGCGCTGGCCGAGCCCCTGGCCCGGGCCGTGGCCGCG
AGGGGGTGGCGGCTCCAGGGCGTCACGGCGGTGCCCACCCTGCCCCACCGGCTCGCCCTCAGGGGCTACAACCCGCCCGA
GGTTTTGGCCCGGGCCCTCGCCGGGGCCCTAGGGGTGCCCTACCGCCCGGTGCTCTTCCGGAGGCGGTACACCCCGGGTC
AGCCCACCCGGGGCCTCAAGGAGCGCCGCTTCCTCCCGGGCGACCTCTTCGGGGCCCGGGTGCGGGTGGAGGGGGCCTGG
CTTTTGGTGGACGACGTCCTCACCAGCGGGGCCACCTTCCTCCGGGCCCGGGGAGCCCTCCTCGAGGCGGGGGCCGCCCA
CGTCTACGGGGCCTTCCTGGCGGTGCGGGACCCCAGGGCCTTGGGGCCTTACCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72JR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.439

100

0.424