Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V2H88_RS09685 Genome accession   NZ_CP144351
Coordinates   2070180..2071457 (+) Length   425 a.a.
NCBI ID   WP_004917728.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RA-3M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065180..2076457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2H88_RS09660 (V2H88_09660) - 2066521..2067705 (-) 1185 WP_004917716.1 sigma-54-dependent transcriptional regulator -
  V2H88_RS09665 (V2H88_09665) - 2067742..2068398 (-) 657 WP_004917720.1 YggS family pyridoxal phosphate-dependent enzyme -
  V2H88_RS09670 (V2H88_09670) mscL 2068475..2068846 (-) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  V2H88_RS09675 (V2H88_09675) lgt 2068987..2069838 (-) 852 WP_004917725.1 prolipoprotein diacylglyceryl transferase -
  V2H88_RS09680 (V2H88_09680) yidD 2069846..2070100 (-) 255 WP_013447220.1 membrane protein insertion efficiency factor YidD -
  V2H88_RS09685 (V2H88_09685) rarA 2070180..2071457 (+) 1278 WP_004917728.1 replication-associated recombination protein A Machinery gene
  V2H88_RS09690 (V2H88_09690) - 2071454..2072065 (-) 612 WP_004917730.1 L-threonylcarbamoyladenylate synthase -
  V2H88_RS09695 (V2H88_09695) - 2072049..2072855 (-) 807 WP_004917734.1 lysophospholipid acyltransferase family protein -
  V2H88_RS09700 (V2H88_09700) - 2072884..2073504 (-) 621 WP_004917736.1 NUDIX hydrolase -
  V2H88_RS09705 (V2H88_09705) - 2073508..2074200 (-) 693 WP_004917739.1 potassium channel family protein -
  V2H88_RS09710 (V2H88_09710) - 2074208..2075956 (-) 1749 WP_004917741.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47550.20 Da        Isoelectric Point: 6.9193

>NTDB_id=847015 V2H88_RS09685 WP_004917728.1 2070180..2071457(+) (rarA) [Riemerella anatipestifer strain RA-3M]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=847015 V2H88_RS09685 WP_004917728.1 2070180..2071457(+) (rarA) [Riemerella anatipestifer strain RA-3M]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.541

95.765

0.388