Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMG89_RS23825 Genome accession   NZ_AP027191
Coordinates   4524433..4524900 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 10153     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4519433..4529900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG89_RS23780 (M10153_4555) rplP 4519543..4519953 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QMG89_RS23785 (M10153_4556) rpsC 4519966..4520667 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QMG89_RS23790 (M10153_4557) rplV 4520685..4521017 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QMG89_RS23795 (M10153_4558) rpsS 4521032..4521310 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QMG89_RS23800 (M10153_4559) rplB 4521327..4522148 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QMG89_RS23805 (M10153_4560) rplW 4522166..4522468 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QMG89_RS23810 (M10153_4561) rplD 4522465..4523070 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QMG89_RS23815 (M10153_4562) rplC 4523081..4523710 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QMG89_RS23820 (M10153_4563) rpsJ 4523743..4524054 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QMG89_RS23825 (M10153_4564) pilD 4524433..4524900 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  QMG89_RS23830 (M10153_4565) bfr 4524897..4525373 (-) 477 WP_000675515.1 bacterioferritin -
  QMG89_RS23835 (M10153_4566) bfd 4525446..4525640 (-) 195 WP_103951229.1 bacterioferritin-associated ferredoxin -
  QMG89_RS23840 (M10153_4567) tuf 4525823..4527007 (-) 1185 WP_000031783.1 elongation factor Tu -
  QMG89_RS23845 (M10153_4568) fusA 4527078..4529192 (-) 2115 WP_000124700.1 elongation factor G -
  QMG89_RS23850 (M10153_4569) rpsG 4529289..4529759 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=84701 QMG89_RS23825 WP_000339836.1 4524433..4524900(+) (pilD) [Escherichia coli strain 10153]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=84701 QMG89_RS23825 WP_000339836.1 4524433..4524900(+) (pilD) [Escherichia coli strain 10153]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment