Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QQM35_RS09225 Genome accession   NZ_CP128355
Coordinates   1849532..1851943 (-) Length   803 a.a.
NCBI ID   WP_342610349.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844532..1856943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS09205 (QQM35_09195) - 1845493..1845816 (-) 324 WP_251520295.1 DUF1292 domain-containing protein -
  QQM35_RS09210 (QQM35_09200) ruvX 1845832..1846260 (-) 429 WP_251520291.1 Holliday junction resolvase RuvX -
  QQM35_RS09215 (QQM35_09205) - 1846263..1846523 (-) 261 WP_342610347.1 IreB family regulatory phosphoprotein -
  QQM35_RS09220 (QQM35_09210) alaS 1846590..1849220 (-) 2631 WP_342610348.1 alanine--tRNA ligase -
  QQM35_RS09225 (QQM35_09215) recD2 1849532..1851943 (-) 2412 WP_342610349.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QQM35_RS09230 (QQM35_09220) - 1851947..1852612 (-) 666 WP_251942841.1 tetratricopeptide repeat protein -
  QQM35_RS09235 (QQM35_09225) mnmA 1852768..1853880 (-) 1113 WP_251520277.1 tRNA 2-thiouridine(34) synthase MnmA -
  QQM35_RS09240 (QQM35_09230) - 1853881..1855023 (-) 1143 WP_251520274.1 cysteine desulfurase family protein -
  QQM35_RS09245 (QQM35_09235) sal 1855084..1856715 (-) 1632 WP_251520271.1 Sal family ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 90535.02 Da        Isoelectric Point: 4.4612

>NTDB_id=846994 QQM35_RS09225 WP_342610349.1 1849532..1851943(-) (recD2) [Staphylococcus hsinchuensis strain H164]
MDDPTLFTQSMIKGTVDAILFQNKDNFYTVLKVDTIESDESFDSMPTIVGFFPDVTEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSELFKGIGKKTAQNIVNTIGENAINDILNNPEVLERVPGLSKKKQKQIADQIASNQETEQII
VRLHDLGFGPKLAMSIYQAYLGETLNIVENKPYQLVYDVRGIGFNKADALARKLGIHFNDVERIKAGLLYVLEEECVKQG
HTYLPKAYTLETTQDMLSNEPSEIIEIEDLAQVVDDLVQNDQLILQQDELAIPSLYYSELKSVQNLYRNYSYTQKLTEIE
QSDVLMEIGEIEDYNKVSYAASQKDALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAQIHDLSLNYDDYQNNDYPVVLG
APTGRASKRLADATGLEAMTIHRLIGWNQDTQPEDLLENEINAKLIIIDEMSMVDTWLFHQFMNAVPLDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGQDIDITQRFHDRSFINCSTEQIPNFVEKVVASAV
KKGYDMSDIQVLAPMYKGAAGIKKLNVILQDILNPKEKDSREITFGEVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AQENDLNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKAQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLKTHGQTRMTHLCTFLKAYFNNEEIEPKLSTANTGDSDEEENEYASLVLTEETIFKINPMINMGQITPYDF
VED

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=846994 QQM35_RS09225 WP_342610349.1 1849532..1851943(-) (recD2) [Staphylococcus hsinchuensis strain H164]
ATGGATGACCCTACATTATTTACACAGTCGATGATCAAAGGGACTGTTGACGCCATACTTTTTCAAAATAAAGACAACTT
TTATACCGTGTTGAAAGTCGACACGATTGAGTCAGACGAGTCATTTGATTCTATGCCGACGATTGTAGGGTTCTTTCCAG
ATGTTACTGAAGGAGATGTCTATACTTTCAAAGGTCAAGTTGTTACACACCCTAAATACGGTAAACAATTAAAAGCTGAA
ACATTTGAAAAAGAATTGCCACAAACTAAAGAAGCTATCATCAGTTACTTATCCAGTGAATTATTTAAAGGTATCGGTAA
AAAAACAGCGCAAAATATTGTAAATACGATTGGCGAAAATGCAATCAACGACATTTTAAACAACCCAGAAGTATTAGAGC
GCGTTCCAGGTTTATCTAAAAAGAAACAAAAGCAAATTGCCGATCAAATTGCTAGTAATCAGGAAACTGAACAAATTATC
GTAAGATTACATGACCTTGGATTTGGTCCGAAATTAGCGATGTCCATTTATCAAGCTTATTTAGGTGAAACACTTAATAT
TGTTGAGAACAAACCCTATCAACTTGTTTATGATGTGCGTGGTATAGGTTTTAATAAAGCAGATGCACTAGCGAGAAAGT
TAGGCATTCACTTTAATGATGTAGAAAGAATTAAAGCAGGGTTACTATACGTATTAGAAGAAGAATGTGTAAAACAAGGA
CATACCTATTTACCGAAAGCATATACACTTGAAACAACACAAGACATGTTATCTAATGAACCTTCCGAAATAATTGAAAT
AGAAGATTTAGCTCAGGTAGTTGATGATTTGGTGCAAAATGATCAGTTGATTCTACAACAAGATGAGTTAGCGATACCTA
GTTTATATTACTCAGAATTAAAAAGTGTACAAAATCTTTATCGAAATTATAGTTATACTCAAAAGTTAACCGAGATAGAA
CAATCGGATGTATTGATGGAAATTGGAGAGATTGAGGATTATAACAAAGTTTCGTATGCTGCATCACAAAAGGACGCATT
ACAAACTGCTATCAATTCAAAGGTGATGTTATTAACCGGGGGACCTGGTACTGGTAAGACTACTGTTATCAAAGGTATCG
TAGAATTATATGCACAAATTCATGATTTATCACTAAATTACGATGATTATCAGAATAACGACTATCCAGTCGTTTTAGGT
GCACCAACAGGTCGCGCTTCTAAACGTTTAGCCGATGCAACAGGATTAGAAGCGATGACCATTCATAGATTAATTGGTTG
GAATCAAGATACACAACCCGAAGATTTATTAGAGAATGAAATAAACGCAAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGTTGTTCCATCAATTTATGAACGCAGTACCTTTAGATGCTCAAATCATATTGGTAGGAGATGAAGATCAA
TTACCATCCGTAGGTCCTGGTCAAGTGTTTAAAGATTTAATAGATTCTAAAGTGATTCCTCGAGTAAATTTGACGGAGGT
ATATCGACAACAAGATGGCTCAAGTATTATAGAGTTAGCCCACCGAATGAAACTCGGTCAAGACATAGATATTACACAGC
GATTCCACGACCGAAGCTTTATTAATTGTTCAACAGAGCAAATACCTAACTTTGTAGAAAAGGTTGTCGCAAGTGCTGTG
AAGAAAGGTTACGATATGAGTGATATCCAAGTGTTAGCACCAATGTATAAAGGTGCTGCAGGTATTAAAAAGCTCAATGT
AATCTTACAAGATATTTTAAATCCAAAGGAAAAAGATTCAAGAGAAATCACTTTTGGAGAGGTTGTTTTTAGAAAAGGCG
ATAAAGTTCTGCAACTTGTGAATCGCCCGAGTGATAATATCTTTAATGGCGACATTGGCGTTATCGTCGGTATATTTTGG
GCTCAAGAAAATGACTTAAATAAAGATGTGTTAGTCGTGGATTTCGAAGGTAATGAAATCACATTTACGAAACAAGATTT
GATGGAACTCACACATGCTTATTGCACTTCAATTCACAAAGCACAAGGTTCAGAGTTTCCTATCGTTATTATGCCGATGG
TTAAACAATATTTTAGAATGTTACAAAAGCCTATTCTATATACAGGGCTTACACGAGCAAAGCAATCCTTAGTGTTTTTA
GGCGATCCTCAAGCTTTTGAAATAGGCTTGAAGACGCACGGTCAAACGAGAATGACTCATCTGTGTACATTTTTAAAGGC
ATACTTTAATAATGAAGAAATAGAACCTAAACTTTCAACAGCTAACACGGGCGATTCAGACGAAGAAGAGAATGAATATG
CATCGCTCGTATTAACTGAAGAAACGATATTTAAAATTAATCCTATGATTAATATGGGACAAATTACGCCTTATGACTTT
GTTGAAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix domain (HHH_5)

(103-149)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.889

100

0.493