Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V3Z63_RS28765 Genome accession   NZ_CP144289
Coordinates   6011025..6011450 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain CH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6006025..6016450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3Z63_RS28750 (V3Z63_28750) pilX 6006589..6007176 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  V3Z63_RS28755 (V3Z63_28755) pilY1 6007188..6010679 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  V3Z63_RS28760 (V3Z63_28760) pilY2 6010681..6011028 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  V3Z63_RS28765 (V3Z63_28765) comF 6011025..6011450 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  V3Z63_RS28770 (V3Z63_28770) ispH 6011497..6012441 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V3Z63_RS28775 (V3Z63_28775) fkpB 6012527..6012967 (-) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  V3Z63_RS28780 (V3Z63_28780) lspA 6012960..6013469 (-) 510 WP_003102615.1 signal peptidase II -
  V3Z63_RS28785 (V3Z63_28785) ileS 6013462..6016293 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=846943 V3Z63_RS28765 WP_003094721.1 6011025..6011450(+) (comF) [Pseudomonas aeruginosa strain CH1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=846943 V3Z63_RS28765 WP_003094721.1 6011025..6011450(+) (comF) [Pseudomonas aeruginosa strain CH1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383