Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VZG47_RS02560 Genome accession   NZ_CP144288
Coordinates   490913..491701 (+) Length   262 a.a.
NCBI ID   WP_338430795.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485913..496701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG47_RS02540 (VZG47_02525) - 486172..486399 (-) 228 WP_338430790.1 photosystem I reaction center subunit IV -
  VZG47_RS02545 (VZG47_02530) - 486579..487598 (+) 1020 WP_338430791.1 hypothetical protein -
  VZG47_RS02550 (VZG47_02535) - 487761..490463 (+) 2703 WP_338430792.1 DEAD/DEAH box helicase -
  VZG47_RS02555 (VZG47_02540) - 490665..490907 (+) 243 WP_208673049.1 hypothetical protein -
  VZG47_RS02560 (VZG47_02545) pilD 490913..491701 (+) 789 WP_338430795.1 prepilin peptidase Machinery gene
  VZG47_RS02565 (VZG47_02550) - 491922..493853 (+) 1932 WP_338430797.1 hypothetical protein -
  VZG47_RS02570 (VZG47_02555) - 493986..494465 (+) 480 WP_338430799.1 hypothetical protein -
  VZG47_RS02575 (VZG47_02560) dacB 494476..495933 (-) 1458 WP_338430800.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28538.18 Da        Isoelectric Point: 10.1546

>NTDB_id=846825 VZG47_RS02560 WP_338430795.1 490913..491701(+) (pilD) [Synechococcus elongatus IITB5]
MFEAVALLFVAVLGAAIGSFLNVVIYRLPLGLSLLHPPSRCPYCRRSLRPQDNVPIIGWLKLKGRCHFCQHRIPARYPIV
EAFTAALFVLLAVQFGWSTATVGGWILFSWLVALSVIDLDTMTLPNALTASGLTVGVAFQLAIAPANWPVTLFWSLFVAI
AALWLSDLFRWVGEFVLRQPVLGGGDSKLLALLGVWLGGPKLLLALFLACLSGAIAGGIGRWRGTLKPMQAMPFGPFLAL
GGAIAWIWGAEWIDRYIRIVLS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=846825 VZG47_RS02560 WP_338430795.1 490913..491701(+) (pilD) [Synechococcus elongatus IITB5]
ATGTTTGAAGCCGTTGCGCTGTTGTTTGTCGCGGTTTTAGGCGCTGCAATCGGCAGTTTTCTCAATGTGGTGATCTATCG
GCTGCCATTGGGACTATCGCTGCTGCACCCGCCCTCCCGTTGTCCTTACTGCCGGCGATCGCTGCGTCCTCAAGATAATG
TGCCGATTATTGGCTGGCTAAAGCTAAAGGGTCGCTGTCATTTTTGTCAGCATCGGATTCCCGCTCGCTACCCAATTGTT
GAGGCATTTACTGCAGCTCTATTTGTTTTGCTAGCGGTACAGTTTGGCTGGTCGACAGCCACGGTCGGTGGTTGGATTCT
CTTCTCGTGGCTCGTGGCCTTGAGTGTCATTGACCTCGATACGATGACGCTGCCCAATGCACTGACGGCTTCGGGACTAA
CTGTGGGCGTCGCTTTTCAGTTGGCGATCGCGCCAGCAAACTGGCCTGTGACGTTGTTCTGGTCGTTGTTTGTAGCGATC
GCGGCATTGTGGCTCAGTGATCTATTCCGCTGGGTTGGTGAATTTGTGCTTCGACAGCCGGTACTCGGCGGTGGCGACAG
CAAGTTGCTAGCACTTTTGGGTGTTTGGCTAGGCGGTCCTAAACTGCTTTTAGCACTGTTCCTCGCTTGTCTGAGTGGCG
CGATCGCGGGGGGTATTGGACGCTGGCGTGGCACACTCAAGCCAATGCAGGCGATGCCTTTTGGTCCGTTCCTAGCACTA
GGCGGCGCGATCGCCTGGATCTGGGGAGCCGAGTGGATTGATCGCTACATCAGAATTGTGCTTTCCTAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-95)

Type IV leader peptidase family (Peptidase_A24)

(106-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

36.201

100

0.385
  pilD Vibrio cholerae strain A1552

35.231

100

0.378