Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSU96_RS14885 Genome accession   NZ_CP128200
Coordinates   3187936..3188637 (+) Length   233 a.a.
NCBI ID   WP_286279681.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3182936..3193637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS14865 (QSU96_14865) - 3183370..3184032 (+) 663 WP_004728474.1 hypothetical protein -
  QSU96_RS14870 (QSU96_14870) - 3184088..3186397 (+) 2310 WP_283512503.1 Tex family protein -
  QSU96_RS14875 (QSU96_14875) - 3186480..3186950 (-) 471 WP_004728470.1 hypothetical protein -
  QSU96_RS14880 (QSU96_14880) bioH 3187079..3187849 (-) 771 WP_238773843.1 pimeloyl-ACP methyl ester esterase BioH -
  QSU96_RS14885 (QSU96_14885) comF 3187936..3188637 (+) 702 WP_286279681.1 phosphoribosyltransferase family protein Machinery gene
  QSU96_RS14890 (QSU96_14890) nfuA 3188738..3189325 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  QSU96_RS14895 (QSU96_14895) nudE 3189471..3190019 (+) 549 WP_286279682.1 ADP compounds hydrolase NudE -
  QSU96_RS14900 (QSU96_14900) cysQ 3190043..3190870 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QSU96_RS14905 (QSU96_14905) - 3190931..3191689 (-) 759 WP_055465865.1 type II secretion system protein N -
  QSU96_RS14910 (QSU96_14910) - 3191686..3192195 (-) 510 WP_158141343.1 type II secretion system protein M -
  QSU96_RS14915 (QSU96_14915) gspL 3192205..3193416 (-) 1212 WP_286279683.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26234.48 Da        Isoelectric Point: 8.8982

>NTDB_id=846743 QSU96_RS14885 WP_286279681.1 3187936..3188637(+) (comF) [Vibrio furnissii strain VFBJ07]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPAPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGSEYDPQLFSRPH
ATVPQHGLDKAQRRRNLNRAFVLNHEPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=846743 QSU96_RS14885 WP_286279681.1 3187936..3188637(+) (comF) [Vibrio furnissii strain VFBJ07]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTGGCGTGGTATGCCCCCGCACCGCGCTGCGCTCGCTGCGGCCTGCCTT
GTGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCTGCGCCGCTGCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCAGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGAGCC
GTGCCAGCAACACGTAGCGATTGTCGACGATGTCGTCACCACTGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGTACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.665

100

0.657
  comF Vibrio campbellii strain DS40M4

48.954

100

0.502