Detailed information NTG0846714

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QSU96_RS02255
• Genome accession: NZ_CP128200
• Coordinates: 468160..469149 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain VFBJ07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 463160..474149

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSU96_RS02220 (QSU96_02220)	ftsB	463175..463459 (+)	285	WP_004723824.1	cell division protein FtsB	-
QSU96_RS02225 (QSU96_02225)	ispD	463456..464169 (+)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QSU96_RS02230 (QSU96_02230)	ispF	464219..464695 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QSU96_RS02235 (QSU96_02235)	truD	464727..465773 (+)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
QSU96_RS02240 (QSU96_02240)	surE	465766..466533 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
QSU96_RS02245 (QSU96_02245)	-	466526..467152 (+)	627	WP_286279830.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QSU96_RS02250 (QSU96_02250)	nlpD	467152..468087 (+)	936	WP_014205778.1	murein hydrolase activator NlpD	-
QSU96_RS02255 (QSU96_02255)	rpoS	468160..469149 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
QSU96_RS02260 (QSU96_02260)	mutS	469218..471779 (-)	2562	WP_286279831.1	DNA mismatch repair protein MutS	-
QSU96_RS02265 (QSU96_02265)	pncC	471864..472358 (+)	495	WP_154180758.1	nicotinamide-nucleotide amidase	-
QSU96_RS02270 (QSU96_02270)	recA	472525..473577 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
QSU96_RS02275 (QSU96_02275)	recX	473672..474142 (+)	471	WP_143680210.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=846714 QSU96_RS02255 WP_004723838.1 468160..469149(+) (rpoS) [Vibrio furnissii strain VFBJ07]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=846714 QSU96_RS02255 WP_004723838.1 468160..469149(+) (rpoS) [Vibrio furnissii strain VFBJ07]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGTATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCGATTCATGTGGTGAAAGAACTGAACATTTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGATCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTTTCCACACAGGATGATGACATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCACGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACGCTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGTCTGAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894