Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   P3L48_RS20060 Genome accession   NZ_CP128196
Coordinates   4031455..4033818 (-) Length   787 a.a.
NCBI ID   WP_286229249.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4026455..4038818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS20035 - 4026498..4026674 (-) 177 WP_164745684.1 hypothetical protein -
  P3L48_RS20040 - 4026839..4027981 (+) 1143 WP_286229246.1 N-acetylmuramoyl-L-alanine amidase -
  P3L48_RS20045 dtd 4028039..4028482 (-) 444 WP_286229247.1 D-aminoacyl-tRNA deacylase -
  P3L48_RS20050 - 4028495..4030690 (-) 2196 WP_066385866.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  P3L48_RS20055 - 4030952..4031464 (-) 513 WP_066385867.1 adenine phosphoribosyltransferase -
  P3L48_RS20060 recJ 4031455..4033818 (-) 2364 WP_286229249.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  P3L48_RS20065 secDF 4033932..4036199 (-) 2268 WP_286229250.1 protein translocase subunit SecDF -
  P3L48_RS20070 - 4036349..4036645 (-) 297 WP_286229251.1 post-transcriptional regulator -
  P3L48_RS20075 spoVB 4036768..4038321 (+) 1554 WP_286229252.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88086.76 Da        Isoelectric Point: 5.0258

>NTDB_id=846682 P3L48_RS20060 WP_286229249.1 4031455..4033818(-) (recJ) [Neobacillus mesonae strain NS-6]
MLKPKTRWVVRDSDRHKAEQLASELNITPLAASLLVNRGFDSASSARFFLFGKDEFHDPYLFKGMDIAVKRIRTAIDEKE
PILIFGDYDADGVSSTSVLMMTLKDLGADVQFYIPNRFTEGYGPNEAAFRHAAETGIKLIITVDTGIAAVHEANVAKELG
IDLIITDHHERGPVIPEALAIIHPKLPDSTYPFRELAGVGVAFKLAHALYDRLPEHLFEIAVIGTIADLVSLTGENRLIA
KRGLEKLKVTKNIGLRAIFKIAGVDPATINEETIGFTIAPRINAVGRLADADLAVDLILCEDSEEAEYLAEEMEGFNKSR
QSIVHTITEEAIAEVESNYPIDDNRVLVIGKEGWNAGVIGIVASKLVEKYYRPAIVLSFDPEKGLAKGSARSIPGFDLFQ
NLSTLRDILPHFGGHPMAAGMTLKLEDVAELREKLNARAFELLTEEDFIPVTYLDEEVHLDEVHLSSLDEISMLAPFGVD
NPKPKVLINNVEITNIRKIGSEQNHLKITVNDPAGNLDGVGFGLGAVVDEISPASKISLIGELSINEWNNIRKPQIFVQD
IAVNSWQLFDFRGQKRINSIPSTVPAENRQIIVFNKQYVEKMNSHLGVETICIEDAEAAKAFDGYHKNIALVDFPPSKEI
LIHLLKGKEPARIYTYFYKASSDFFSTVPTREHFKWYYGFLLKKGPVDLKRYGDDIAKLKGWSRETIIFMSKVFSELDFV
TINNGFITLNNQPQKRDLTDSKTFLQKQAQSALEKDLLFSSFEELKRWFSNIIEESVEIEEEVKQWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=846682 P3L48_RS20060 WP_286229249.1 4031455..4033818(-) (recJ) [Neobacillus mesonae strain NS-6]
ATGTTAAAACCGAAAACAAGATGGGTTGTGCGTGATTCTGACCGTCACAAGGCTGAACAGCTTGCATCTGAATTAAACAT
TACTCCTCTTGCTGCATCATTGCTTGTTAACCGTGGATTTGATTCTGCATCCTCCGCACGGTTTTTTTTATTTGGAAAGG
ATGAGTTTCACGATCCCTATTTGTTTAAAGGAATGGATATTGCCGTCAAGCGGATTCGAACTGCGATAGATGAGAAAGAG
CCAATATTGATTTTTGGGGATTATGACGCTGATGGAGTCAGCAGTACGTCTGTATTAATGATGACACTTAAAGATTTAGG
TGCTGACGTTCAGTTTTATATTCCTAATCGTTTTACAGAAGGTTATGGTCCGAATGAAGCCGCTTTTCGACACGCGGCCG
AAACCGGTATTAAATTGATCATTACTGTTGACACAGGGATTGCGGCGGTACATGAGGCCAATGTCGCGAAGGAACTGGGA
ATTGATCTCATCATTACTGACCACCACGAACGGGGACCCGTCATTCCGGAAGCTCTGGCCATTATTCACCCAAAACTCCC
AGACAGTACGTATCCGTTTCGGGAACTGGCAGGTGTCGGTGTTGCCTTTAAATTAGCCCATGCACTTTATGACAGACTGC
CGGAGCATTTATTTGAAATAGCCGTTATTGGAACGATTGCAGACCTTGTTTCTTTAACAGGGGAAAATCGTTTAATTGCC
AAAAGAGGTCTGGAAAAATTAAAAGTAACGAAAAATATCGGTCTTCGGGCTATTTTTAAAATAGCGGGTGTCGATCCGGC
GACGATTAACGAAGAAACCATCGGCTTTACGATTGCTCCCCGGATAAATGCTGTTGGGCGGTTAGCTGATGCCGATTTAG
CGGTAGATCTTATTTTATGTGAGGACTCGGAAGAAGCTGAATATCTTGCTGAAGAGATGGAAGGTTTCAATAAATCACGG
CAGTCTATCGTTCATACCATAACAGAGGAAGCAATTGCTGAGGTAGAAAGCAACTATCCAATTGACGATAATAGAGTCCT
AGTTATCGGGAAGGAAGGCTGGAATGCCGGGGTAATTGGCATTGTTGCCTCGAAGCTGGTAGAAAAGTATTATCGTCCTG
CGATTGTTTTAAGCTTTGACCCGGAAAAGGGTTTGGCGAAGGGATCCGCTCGAAGTATTCCAGGATTTGATCTGTTTCAA
AATTTATCAACGCTAAGAGATATCCTACCGCATTTTGGCGGCCATCCGATGGCAGCAGGGATGACCTTAAAGCTGGAAGA
TGTGGCAGAACTGCGTGAAAAATTAAATGCCCGTGCATTTGAATTGCTGACGGAGGAAGATTTTATTCCAGTCACGTATC
TTGATGAAGAAGTGCATTTGGATGAGGTTCATTTATCATCATTGGATGAAATCTCCATGCTTGCCCCGTTTGGGGTAGAT
AATCCGAAGCCCAAGGTACTCATTAATAATGTTGAAATCACTAATATCCGAAAAATTGGCAGCGAGCAAAATCATTTGAA
AATTACTGTTAATGATCCCGCCGGAAATTTGGATGGTGTAGGGTTTGGGCTAGGAGCAGTGGTGGATGAAATTTCTCCCG
CTTCAAAAATATCATTAATCGGAGAATTATCCATCAATGAATGGAACAATATACGTAAACCACAAATTTTTGTCCAAGAC
ATTGCTGTGAATTCGTGGCAGTTATTTGATTTTCGCGGACAGAAGCGGATTAATAGCATTCCATCAACCGTTCCGGCTGA
AAATAGACAGATTATTGTTTTTAATAAACAGTATGTGGAAAAAATGAATTCCCATCTTGGTGTGGAGACGATTTGTATTG
AGGATGCTGAGGCGGCAAAAGCGTTTGACGGCTACCATAAAAATATTGCCTTAGTAGACTTCCCACCGTCTAAGGAGATT
CTCATCCACTTATTGAAAGGGAAAGAGCCCGCACGTATCTATACTTATTTTTACAAAGCGTCGAGCGACTTTTTCAGTAC
TGTACCAACACGAGAGCATTTTAAATGGTACTATGGCTTCTTATTGAAAAAAGGACCTGTTGACCTTAAGCGCTATGGAG
ACGATATTGCGAAACTTAAAGGCTGGTCGCGGGAAACGATTATCTTTATGTCAAAGGTGTTTTCTGAATTAGATTTTGTT
ACAATAAACAATGGATTTATTACCTTAAATAATCAACCACAGAAACGCGATTTAACTGACTCGAAAACCTTTCTGCAAAA
GCAGGCACAATCAGCTCTTGAAAAAGATTTATTGTTTTCCTCCTTTGAGGAATTAAAGAGATGGTTTTCGAACATTATCG
AGGAGTCAGTTGAAATTGAGGAGGAAGTTAAACAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(316-437)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.003

100

0.54