Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3L48_RS19935 Genome accession   NZ_CP128196
Coordinates   4002558..4004972 (-) Length   804 a.a.
NCBI ID   WP_286229233.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3997558..4009972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS19915 - 4000508..4001599 (-) 1092 WP_127488140.1 AI-2E family transporter -
  P3L48_RS19920 - 4001683..4001817 (-) 135 WP_286229230.1 YrzQ family protein -
  P3L48_RS19925 - 4001853..4002044 (-) 192 WP_066385757.1 hypothetical protein -
  P3L48_RS19930 - 4002056..4002526 (-) 471 WP_286229231.1 PRC-barrel domain-containing protein -
  P3L48_RS19935 recD2 4002558..4004972 (-) 2415 WP_286229233.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3L48_RS19940 - 4005007..4005657 (-) 651 WP_066385827.1 tetratricopeptide repeat protein -
  P3L48_RS19945 - 4005774..4007150 (-) 1377 WP_286229234.1 amino acid permease -
  P3L48_RS19950 - 4007227..4008516 (-) 1290 WP_286229235.1 dihydrolipoamide acetyltransferase family protein -
  P3L48_RS19955 - 4008529..4009545 (-) 1017 WP_286229236.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90838.03 Da        Isoelectric Point: 4.9695

>NTDB_id=846681 P3L48_RS19935 WP_286229233.1 4002558..4004972(-) (recD2) [Neobacillus mesonae strain NS-6]
MANQESLDLFGEQGRFIKGRPIVTIFHNEQNLYTVLRIRVDETNHTYHDKEAVITGYFPKVYEQETYIFYGEFKEHPKFG
LQFQANHFRKDMPQSKQGIVAYLSGEMFKGIGKKTAENIVETLGEDAISKILNHPSLLDSVPKLPPDKAKLLYDTLMEHQ
GLEQIMITLNQFGFGPQLSMRIYQAYKEETLSIIEKNPYKLVEDVEGIGFGRADELGYQLGMTGNHPDRIKAGCLYMLEN
ECMQTGHVYMQAEDLLERVKALLEENKRDQIDYLNISNEIIKLEEEGKIIGEEKRVYLPSLFYAEKGLVTNIQRILKQTE
YKDQFPESEFLLALGGLEERLGVQYAPTQREAIQTALMSPMMILTGGPGTGKTTVIKGIVELYGELHGCSLEIKDYHKKD
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEGFEREDTSPLEGKILIVDETSMLDIWLANQLFKALPENIQV
ILVGDEDQLPSVGPGQVLKDLLHSERIPTVRLTDIYRQAEGSSIIELAHEIKKGRLPADVTMKQADRSFIKCSTAQVAQV
VEKVALNAKTKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGEVKYRIGDKVLQLVNQPENNVFNG
DIGEIISIIYAKENTEKQDMIYISYEGNEVEYTRQDLTQITHAYCCSVHKSQGSEFPIVILPVTRSYYRMLQRNLIYTAI
TRSKQSLILCGEPDALKMGVERADESKRLTTLSEKLQEAILPMNGKVEQNAEASGELSLEEELMQVNPMIGMENVSPYDF
MVND

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=846681 P3L48_RS19935 WP_286229233.1 4002558..4004972(-) (recD2) [Neobacillus mesonae strain NS-6]
ATGGCAAATCAAGAATCATTGGATTTATTTGGGGAACAAGGGCGGTTTATAAAAGGAAGACCAATTGTGACCATTTTTCA
TAATGAACAGAACCTTTATACCGTTCTAAGAATCCGCGTTGATGAAACTAATCATACATATCATGATAAAGAAGCGGTCA
TTACCGGCTATTTTCCGAAAGTTTACGAGCAAGAAACCTATATTTTTTACGGCGAATTTAAGGAGCACCCAAAATTCGGC
CTGCAATTTCAAGCGAATCATTTTCGCAAGGATATGCCGCAGTCAAAGCAGGGGATTGTTGCCTATTTGTCAGGAGAAAT
GTTTAAAGGGATCGGTAAGAAAACGGCCGAAAATATTGTCGAAACATTAGGGGAAGACGCCATCTCCAAAATCCTTAATC
ATCCTTCGCTGCTCGATTCGGTTCCAAAGCTCCCTCCCGATAAAGCGAAATTATTATACGATACATTGATGGAGCATCAA
GGCCTTGAACAGATTATGATTACCCTCAATCAATTTGGCTTTGGTCCGCAGCTGTCCATGCGAATATATCAAGCATATAA
AGAGGAAACGCTAAGCATCATTGAAAAGAATCCTTATAAGCTTGTCGAGGATGTTGAAGGAATTGGTTTTGGTCGGGCTG
ATGAGCTCGGCTACCAGCTGGGAATGACCGGAAACCATCCCGACCGAATAAAAGCAGGCTGTTTATATATGTTAGAAAAC
GAATGTATGCAAACCGGACATGTTTATATGCAGGCAGAGGATTTACTTGAACGTGTAAAAGCGCTGCTTGAAGAAAATAA
ACGTGATCAAATTGATTATTTGAATATTTCTAATGAGATCATCAAGCTTGAAGAAGAAGGAAAGATCATTGGTGAAGAAA
AAAGGGTTTATTTGCCGTCGTTATTTTATGCGGAAAAGGGTTTGGTAACAAATATTCAGCGCATTTTAAAACAAACGGAA
TATAAGGACCAATTTCCTGAATCGGAATTTTTGCTCGCTTTAGGCGGTTTAGAGGAAAGGCTGGGTGTGCAATATGCACC
GACGCAGAGGGAAGCAATTCAAACCGCGCTCATGTCGCCGATGATGATTTTAACCGGCGGACCCGGCACAGGTAAAACAA
CTGTCATTAAAGGGATTGTCGAGCTTTATGGGGAATTGCACGGCTGTTCGTTAGAAATAAAAGACTATCATAAAAAAGAT
GAGCCGTTTCCCTTCTTACTGGCAGCTCCTACCGGCCGGGCGGCTAAAAGAATGAGCGAATCGACAGGGCTTCCGGCCGT
TACAATCCACCGGCTGCTCGGCTTTAACGGAACAGAAGGCTTTGAGCGGGAAGATACGAGTCCGTTAGAAGGAAAAATTT
TAATTGTTGATGAAACTTCCATGCTTGATATTTGGCTGGCCAATCAATTGTTTAAGGCCCTGCCTGAGAATATCCAAGTC
ATTCTAGTTGGTGACGAGGATCAGCTGCCATCGGTCGGTCCGGGGCAGGTTTTAAAGGATTTGCTTCATTCAGAACGGAT
TCCAACGGTAAGGCTGACAGATATTTACCGTCAGGCAGAAGGATCCTCGATCATTGAGCTTGCCCATGAAATTAAAAAAG
GACGGCTGCCTGCTGATGTGACAATGAAGCAGGCGGATCGTTCGTTTATTAAATGTTCAACTGCACAGGTGGCACAGGTG
GTGGAGAAGGTTGCCTTAAATGCCAAAACCAAGGGGTATTCAGCTAAGGATATTCAAGTGCTTGCCCCGATGTACCGAGG
ACCTGCAGGAATTGACCGCTTAAACGTATTATTGCAGGAAATCTTTAATCCCAATCCTGACGGCAAACGGAAGGAAATTG
CTTTTGGTGAAGTAAAGTACAGGATTGGCGACAAGGTGCTCCAGCTAGTAAACCAGCCGGAGAATAACGTATTTAACGGG
GATATCGGTGAAATAATATCTATTATCTATGCCAAGGAGAATACCGAAAAGCAGGATATGATTTATATTTCCTATGAAGG
AAATGAAGTCGAGTATACGAGGCAGGATTTAACTCAAATTACCCATGCCTATTGCTGCTCAGTCCATAAATCTCAAGGCA
GTGAATTTCCGATTGTCATCCTTCCCGTCACGAGAAGCTATTACCGCATGCTGCAGCGGAATTTGATCTATACTGCGATT
ACCAGAAGCAAACAGTCATTGATTCTATGCGGCGAACCGGATGCGCTTAAGATGGGCGTTGAACGAGCGGATGAATCGAA
GCGGTTAACGACATTATCTGAAAAACTTCAGGAAGCCATTCTACCAATGAATGGAAAGGTTGAACAGAATGCAGAAGCTT
CTGGAGAGCTTTCCTTAGAAGAAGAATTAATGCAGGTCAACCCGATGATTGGAATGGAAAACGTTTCACCTTATGATTTT
ATGGTAAATGACTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.965

98.756

0.612