Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRA13_RS03665 Genome accession   NZ_CP128184
Coordinates   843065..843844 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 838065..848844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS03635 (QRA13_03635) fliH 838108..838863 (-) 756 WP_082998011.1 flagellar assembly protein FliH -
  QRA13_RS03640 (QRA13_03640) fliG 838856..839872 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QRA13_RS03645 (QRA13_03645) fliF 839886..841496 (-) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  QRA13_RS03650 (QRA13_03650) fliE 841539..841859 (-) 321 WP_045207408.1 flagellar hook-basal body complex protein FliE -
  QRA13_RS03655 (QRA13_03655) flgC 841870..842322 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  QRA13_RS03660 (QRA13_03660) flgB 842322..842711 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QRA13_RS03665 (QRA13_03665) codY 843065..843844 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRA13_RS03670 (QRA13_03670) hslU 843882..845285 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  QRA13_RS03675 (QRA13_03675) hslV 845302..845847 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QRA13_RS03680 (QRA13_03680) xerC 845863..846780 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  QRA13_RS03685 (QRA13_03685) trmFO 846850..848157 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=846478 QRA13_RS03665 WP_003154263.1 843065..843844(-) (codY) [Bacillus velezensis strain YJ0-1 isolate soil]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=846478 QRA13_RS03665 WP_003154263.1 843065..843844(-) (codY) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471