Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QSU93_RS04610 Genome accession   NZ_CP128169
Coordinates   906665..907552 (+) Length   295 a.a.
NCBI ID   WP_152787526.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain RC4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 901665..912552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU93_RS04590 (QSU93_04590) - 901747..902709 (+) 963 WP_286102704.1 LPXTG cell wall anchor domain-containing protein -
  QSU93_RS04595 (QSU93_04595) - 902984..904369 (+) 1386 WP_100351672.1 amino acid permease -
  QSU93_RS04600 (QSU93_04600) - 904525..905220 (+) 696 WP_286102705.1 hypothetical protein -
  QSU93_RS04605 (QSU93_04605) - 905220..906590 (+) 1371 WP_286102706.1 C69 family dipeptidase -
  QSU93_RS04610 (QSU93_04610) endA 906665..907552 (+) 888 WP_152787526.1 DNA/RNA non-specific endonuclease Machinery gene
  QSU93_RS04615 (QSU93_04615) - 907643..908530 (-) 888 WP_286102707.1 3-hydroxyacyl-CoA dehydrogenase -
  QSU93_RS04620 (QSU93_04620) - 908871..911219 (+) 2349 WP_286102708.1 ATP-binding protein -
  QSU93_RS04625 (QSU93_04625) - 911358..912215 (+) 858 WP_096493997.1 alpha/beta hydrolase -
  QSU93_RS04630 (QSU93_04630) - 912223..912399 (+) 177 WP_164475275.1 hypothetical protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32090.85 Da        Isoelectric Point: 10.8214

>NTDB_id=846427 QSU93_RS04610 WP_152787526.1 906665..907552(+) (endA) [Limosilactobacillus fermentum strain RC4]
MKRRRNKKQGWRWLIAFVILFALASGIPGKASSTTTTSSPSAQTLVAKVNSLVENLSYRSRSSSTSGSSTMVTPSKQKAE
AVLTANVKQQLGSSITWNGDGAFIINNNKTKLNAKINNAPYAVDRLDSQGRAWQGDAWLNKTTRQYKNRSETGNGATSWR
PVGFMQLTNLKNGPTHAYDRGHLLGYALVGGLSGFNASESNPKNIATQTAWANEARSTDSTGQNYYEGLVRKALDRGKQV
RYRVTDIYDGNNLVPSGAQIEAKSKDGSLQFNVFVPNVQNNITINYATGKATATN

Nucleotide


Download         Length: 888 bp        

>NTDB_id=846427 QSU93_RS04610 WP_152787526.1 906665..907552(+) (endA) [Limosilactobacillus fermentum strain RC4]
ATGAAACGCCGACGTAACAAGAAGCAGGGCTGGCGCTGGTTAATTGCCTTCGTCATCCTCTTCGCCCTTGCCTCGGGTAT
CCCGGGCAAGGCATCTTCTACGACCACCACTAGTTCACCGAGTGCCCAAACCCTGGTTGCCAAGGTCAACTCCCTGGTGG
AAAACCTAAGCTACCGGTCGCGCTCGTCGTCAACCAGCGGCTCGAGCACGATGGTCACCCCGAGCAAGCAAAAGGCCGAG
GCGGTTTTAACCGCCAACGTTAAGCAACAACTGGGGAGTTCGATCACTTGGAATGGCGATGGGGCCTTCATTATCAACAA
CAATAAGACTAAGCTCAATGCCAAGATCAACAACGCGCCCTACGCCGTTGACCGGCTCGACAGCCAGGGGCGTGCTTGGC
AGGGCGATGCTTGGTTAAACAAAACGACGCGCCAATACAAGAATCGTTCCGAAACCGGGAACGGCGCCACTAGTTGGAGA
CCGGTCGGCTTTATGCAACTGACCAACTTAAAGAACGGCCCGACCCACGCTTATGACCGGGGGCACCTACTCGGCTACGC
CTTGGTCGGGGGGCTCTCCGGTTTCAACGCTTCGGAGTCCAACCCGAAAAACATCGCCACCCAAACCGCTTGGGCTAACG
AAGCCCGGTCAACCGATTCAACCGGGCAAAACTACTACGAAGGCCTAGTTCGCAAGGCCCTCGACCGCGGTAAGCAAGTC
CGCTACCGGGTAACCGACATTTATGACGGTAACAACCTAGTTCCGTCCGGCGCCCAGATTGAGGCCAAGTCAAAGGACGG
CAGCCTCCAGTTCAACGTCTTTGTTCCGAACGTTCAAAATAACATTACGATCAATTACGCCACCGGGAAGGCCACCGCTA
CTAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(115-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

57.028

84.407

0.481
  endA Streptococcus pneumoniae D39

57.028

84.407

0.481
  endA Streptococcus pneumoniae R6

57.028

84.407

0.481
  endA Streptococcus pneumoniae TIGR4

57.028

84.407

0.481