Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QRD89_RS12235 Genome accession   NZ_CP128168
Coordinates   2292480..2294807 (-) Length   775 a.a.
NCBI ID   WP_026577180.1    Uniprot ID   A0A7Z2YAW4
Organism   Halobacillus sp. ACCC02827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2287480..2299807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD89_RS12220 (QRD89_12220) - 2290364..2291425 (-) 1062 WP_286095334.1 AI-2E family transporter -
  QRD89_RS12225 (QRD89_12225) - 2291422..2291598 (-) 177 WP_201029303.1 hypothetical protein -
  QRD89_RS12230 (QRD89_12230) - 2291648..2292466 (-) 819 WP_236096516.1 TIM barrel protein -
  QRD89_RS12235 (QRD89_12235) recD2 2292480..2294807 (-) 2328 WP_026577180.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QRD89_RS12240 (QRD89_12240) - 2294828..2295547 (-) 720 WP_153017407.1 tetratricopeptide repeat protein -
  QRD89_RS12245 (QRD89_12245) mnmA 2295557..2296669 (-) 1113 WP_286095336.1 tRNA 2-thiouridine(34) synthase MnmA -
  QRD89_RS12250 (QRD89_12250) - 2296685..2297827 (-) 1143 WP_286095338.1 cysteine desulfurase family protein -
  QRD89_RS12255 (QRD89_12255) - 2297850..2298269 (-) 420 WP_008639507.1 Rrf2 family transcriptional regulator -
  QRD89_RS12260 (QRD89_12260) - 2298223..2298906 (-) 684 WP_008639503.1 YitT family protein -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 88166.98 Da        Isoelectric Point: 4.8849

>NTDB_id=846396 QRD89_RS12235 WP_026577180.1 2292480..2294807(-) (recD2) [Halobacillus sp. ACCC02827]
MMQPSLFNETEEERPYVKGELARMIFHKETEQFSIASIKVTETNEDFDDKNLVIKGHFSPLEEGETYIFHGEFKNHKKFG
KQYEVQMYHRVLPETKDGLVLYLSSDLFHGIGKKTAERIVEHLGEKAVSKILSDRDVLKEVPKLPEEKAEQLYYALKEHQ
GFEHVMVHLSQYGFGLKLAQKIYQAFQDQTMAIIEEDPYQLVFHVEGFGFHRADEIAKAQNLSLDHPTRIRAACLYIMQK
SMGAGHVYLPTEECLLQVEQLLNQGENGSISFEQLSEQIINLGEEKYVYIEENRVYLPSLYFAENGVRTHLDRIQIEEVE
AEHTQADLLKLIGKLEEEEAISYGEEQYKAIEQALQSKLMILTGGPGTGKTTVIKGILQTYAGLNELSMDPEDYGSDKPF
PFVLAAPTGRAAKRMTESTGLPASTIHRLLGWDGHDSFERNQNNPLEGNVLIVDEFSMVDVWLANQLFRAVPSNMQVLLV
GDEDQLPSVGPGQVLADLLASGVIPSTKLTEVYRQKEGSKIIQLAHEIKNDTCSIRSLVKEHDFNFIPAKEHQLSDLVTN
IVKKAQEKGIEMKDLQVLAPMYRTEVGIHQLNRSIQESVNPKHKQKRDLTYFDVTYRKGDKVIQLVNQPEDGVYNGDIGE
VVAIFREEENTDGVEQLVIDFDGKEVVYPKKDLNNVMHAYCTSIHKSQGSEFAIVVLPVVRSYRRMLRKNLLYTAITRSK
QSLIICGDKEAFLDGIGTTDTNTRYTMLKEKLQSEEPQDVNGEEEEEQLSPYDFM

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=846396 QRD89_RS12235 WP_026577180.1 2292480..2294807(-) (recD2) [Halobacillus sp. ACCC02827]
ATGATGCAACCATCCCTTTTTAATGAAACGGAAGAAGAACGCCCTTATGTCAAAGGGGAACTGGCCCGGATGATCTTCCA
TAAGGAGACGGAGCAGTTCTCCATCGCTTCGATCAAGGTGACAGAAACGAACGAAGACTTCGATGATAAGAATCTTGTGA
TCAAAGGTCATTTCTCCCCCCTCGAAGAAGGGGAGACGTATATCTTTCATGGAGAATTTAAAAATCATAAGAAGTTCGGG
AAGCAGTACGAGGTTCAGATGTATCATCGTGTACTTCCGGAAACGAAAGACGGGTTGGTTCTGTATTTGTCCAGTGATCT
CTTTCATGGAATCGGAAAGAAAACGGCAGAGCGGATCGTGGAGCATCTTGGAGAGAAGGCCGTTTCCAAAATCCTTTCCG
ATCGCGATGTGTTGAAGGAAGTACCGAAGCTGCCTGAAGAAAAAGCAGAGCAGCTTTACTACGCACTGAAAGAGCATCAA
GGATTCGAGCATGTGATGGTACATCTGTCCCAATATGGATTCGGTTTGAAACTTGCTCAGAAAATTTATCAGGCGTTCCA
AGATCAAACGATGGCCATCATCGAGGAAGATCCTTATCAACTCGTCTTTCATGTAGAAGGATTCGGTTTCCATCGCGCGG
ATGAGATCGCCAAAGCCCAGAATCTGTCTTTGGATCATCCGACAAGGATCCGGGCTGCCTGCCTCTATATCATGCAGAAA
AGCATGGGAGCGGGACACGTGTACCTTCCGACAGAAGAGTGCCTGTTACAGGTAGAACAACTGCTTAATCAGGGAGAGAA
CGGGTCCATCTCCTTTGAACAGCTTTCTGAACAGATCATCAATCTTGGTGAAGAGAAATATGTCTACATCGAAGAAAATC
GTGTGTATCTGCCTTCGCTTTATTTTGCGGAAAACGGGGTTCGCACGCACTTGGACCGCATTCAAATAGAAGAAGTGGAA
GCGGAACACACGCAGGCGGATTTGTTAAAGCTCATCGGCAAGTTGGAGGAAGAGGAAGCCATCAGTTACGGAGAAGAGCA
GTATAAGGCGATTGAACAAGCTCTTCAGTCCAAACTAATGATTCTTACCGGTGGACCGGGGACAGGGAAAACGACCGTCA
TTAAAGGGATTCTCCAAACATATGCCGGCCTGAACGAGCTTTCTATGGATCCGGAAGACTATGGAAGTGATAAGCCGTTT
CCGTTCGTTTTAGCAGCTCCGACCGGTCGTGCCGCGAAACGTATGACCGAATCGACAGGGCTGCCGGCGAGTACGATCCA
CCGTCTTCTCGGCTGGGACGGTCACGACTCGTTTGAAAGGAATCAAAATAATCCATTGGAAGGCAATGTTTTGATCGTGG
ATGAATTCTCTATGGTGGATGTTTGGCTTGCGAATCAGCTGTTCCGGGCTGTTCCGTCTAATATGCAGGTGCTTCTCGTC
GGGGATGAAGACCAGCTGCCGTCTGTCGGCCCCGGCCAGGTGCTGGCGGATTTATTGGCATCAGGAGTCATCCCTTCCAC
TAAATTGACGGAGGTGTACCGCCAGAAAGAGGGTTCGAAAATCATTCAGCTCGCGCACGAGATCAAAAACGATACCTGCT
CGATCCGCTCGCTTGTGAAGGAGCATGATTTTAATTTCATCCCCGCTAAAGAACACCAGCTGAGCGACCTCGTTACAAAC
ATCGTGAAGAAAGCGCAGGAGAAAGGGATCGAGATGAAGGATCTTCAGGTCCTGGCACCGATGTACCGGACAGAAGTAGG
GATTCATCAGCTTAATCGAAGCATTCAGGAATCGGTCAATCCCAAGCATAAGCAGAAACGGGATTTGACTTATTTTGACG
TCACCTATAGAAAAGGGGACAAAGTGATCCAATTGGTCAACCAACCGGAAGACGGAGTGTACAATGGGGACATTGGAGAG
GTGGTCGCCATTTTCCGTGAAGAAGAGAATACGGACGGTGTCGAGCAGCTGGTCATTGACTTCGATGGGAAAGAGGTAGT
CTACCCGAAGAAGGATTTGAATAACGTCATGCACGCCTACTGCACGTCAATTCACAAGTCACAGGGGAGTGAGTTTGCGA
TCGTTGTTCTTCCTGTTGTAAGAAGTTACCGGAGGATGCTCAGGAAAAACTTACTTTATACGGCTATCACTCGTTCGAAG
CAGTCATTGATCATCTGTGGAGATAAAGAAGCATTTCTGGACGGCATCGGGACGACGGATACCAACACCCGATACACCAT
GCTCAAAGAGAAGCTGCAGTCCGAGGAACCTCAGGACGTAAATGGAGAGGAAGAAGAGGAACAGCTCTCCCCGTACGATT
TCATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-534)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YAW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.17

100

0.497