Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRE67_RS22225 Genome accession   NZ_CP128153
Coordinates   4433509..4434309 (-) Length   266 a.a.
NCBI ID   WP_286122354.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4428509..4439309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS22215 (QRE67_22210) leuS 4429144..4431552 (-) 2409 WP_286122352.1 leucine--tRNA ligase -
  QRE67_RS22220 (QRE67_22215) - 4431958..4433151 (-) 1194 WP_286122353.1 MFS transporter -
  QRE67_RS22225 (QRE67_22220) codY 4433509..4434309 (-) 801 WP_286122354.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRE67_RS22230 (QRE67_22225) - 4435091..4436941 (-) 1851 WP_286122355.1 FtsX-like permease family protein -
  QRE67_RS22235 (QRE67_22230) - 4436958..4437719 (-) 762 WP_286122356.1 ABC transporter ATP-binding protein -
  QRE67_RS22240 (QRE67_22235) - 4437851..4438000 (-) 150 WP_017153776.1 hypothetical protein -
  QRE67_RS22245 (QRE67_22240) - 4438018..4438281 (-) 264 WP_286122357.1 YtzC family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29512.04 Da        Isoelectric Point: 6.6552

>NTDB_id=846365 QRE67_RS22225 WP_286122354.1 4433509..4434309(-) (codY) [Bacillus sp. DX3.1]
MGLLVKTRTLNALLQSTAGQTVNFREMADTMCEVIEANVFIVNNRGKLLGYAIHQQIENERMKQMLAGRQFPEEYTQSLF
NITEISSNLDVNSKYTGFPVENKELFGQGLTTIIPIVGGGESLGTIVLVRTHQEFLDDDLILAEYSSTVVGMKILHEKAG
KVEEEARSKAIVQMAIRSLSYSELEAIEHIFEELDGTEGLLVASKIADRVGITRSVIVNGFRKLASAGIVESRSLGMKGT
RIKVLNDKFLPELANLKTNNKHRKII

Nucleotide


Download         Length: 801 bp        

>NTDB_id=846365 QRE67_RS22225 WP_286122354.1 4433509..4434309(-) (codY) [Bacillus sp. DX3.1]
ATGGGACTATTAGTAAAAACAAGAACGTTAAACGCGTTATTACAAAGTACAGCAGGACAAACTGTAAACTTTAGAGAAAT
GGCAGATACAATGTGTGAAGTAATTGAAGCAAACGTATTCATAGTAAACAATCGTGGTAAGTTATTAGGATATGCAATTC
ATCAACAAATTGAAAATGAGCGCATGAAACAAATGCTTGCGGGGCGTCAATTCCCAGAAGAATATACACAAAGCCTATTC
AATATTACAGAAATATCTTCAAACTTAGATGTAAATAGTAAATATACAGGGTTCCCTGTAGAAAACAAAGAATTGTTTGG
TCAAGGCTTAACTACAATTATACCAATCGTTGGTGGTGGCGAGAGTTTAGGTACAATAGTATTAGTTCGTACCCATCAAG
AGTTTTTAGATGATGATTTAATTCTTGCTGAGTATAGCTCTACTGTAGTAGGTATGAAAATCTTACATGAAAAAGCGGGA
AAAGTTGAAGAGGAAGCTCGTAGTAAAGCAATTGTTCAAATGGCAATCCGCTCATTATCATACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAGATGGAACAGAAGGATTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGTATCACTC
GTTCTGTAATCGTAAACGGATTTCGTAAACTCGCGAGTGCAGGTATCGTTGAATCTCGTTCTTTGGGTATGAAAGGAACA
CGTATTAAAGTATTAAATGACAAGTTTTTACCAGAACTTGCAAATTTAAAAACTAACAATAAGCACAGAAAAATAATTTA
A

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

72.587

97.368

0.707
  codY Lactococcus lactis subsp. lactis strain DGCC12653

43.529

95.865

0.417