Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QRE67_RS20650 Genome accession   NZ_CP128153
Coordinates   4111625..4113952 (-) Length   775 a.a.
NCBI ID   WP_286122070.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4106625..4118952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS20630 (QRE67_20625) - 4107870..4108046 (-) 177 WP_001242606.1 hypothetical protein -
  QRE67_RS20635 (QRE67_20630) dtd 4108192..4108632 (-) 441 WP_286122067.1 D-aminoacyl-tRNA deacylase -
  QRE67_RS20640 (QRE67_20635) relA 4108650..4110836 (-) 2187 WP_286122068.1 GTP diphosphokinase -
  QRE67_RS20645 (QRE67_20640) - 4111052..4111564 (-) 513 WP_286122069.1 adenine phosphoribosyltransferase -
  QRE67_RS20650 (QRE67_20645) recJ 4111625..4113952 (-) 2328 WP_286122070.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QRE67_RS20655 (QRE67_20650) - 4114106..4114999 (-) 894 WP_286122071.1 cation diffusion facilitator family transporter -
  QRE67_RS20660 (QRE67_20655) secDF 4115256..4117520 (-) 2265 WP_286122072.1 protein translocase subunit SecDF -
  QRE67_RS20665 (QRE67_20660) - 4117964..4118248 (-) 285 WP_286125344.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 87580.99 Da        Isoelectric Point: 4.9822

>NTDB_id=846359 QRE67_RS20650 WP_286122070.1 4111625..4113952(-) (recJ) [Bacillus sp. DX3.1]
MLQAKTRWKEKHYNEEIVSQLASKLQLTPLVTSLFLNRGLDTEEKIVDFLNTEKQEFHDPFLLEGMDRTVERVQQAIQNG
EQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGYGPNEAAFRWAHGAGFSLIITVDTGIAAVHEAQVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VQRGLKQMRATKRVGLQALFKVGNISQNEITEESIGFSLAPRINAIGRLEDAAPAVHLLLSEDPEEASELAAEIDELNKL
RKDIVKQITEEAIAEVENTYPPEKNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIILNIDPEKQTAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVEELRRRLNEQAEAILTAEDFIPITTVDAICKVKDVTLSAIEEMQKLAPFGV
GNPKPRIAVQDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVARVSVVGEASINEWNNFRKPQLMVQ
DIAVNAWQLFDWRSMRNVEVNIAELSLERVTMIYFSEEVLNKFSLETYREQLQHASEVTGLEDRYVVLLDLPPTTEELSK
LFTAGFPARIYTLFYQENNHLFSTIPTREHFKWYYSFLHQKAPFSLRQHGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFIAEEMKKRDLIESNTYREKMNQLQLEQELVYSTYQQLYTWFEKIRNHKEI

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=846359 QRE67_RS20650 WP_286122070.1 4111625..4113952(-) (recJ) [Bacillus sp. DX3.1]
GTGTTACAAGCGAAGACGCGTTGGAAAGAAAAACATTATAACGAGGAGATTGTGAGTCAATTAGCGAGTAAGCTTCAATT
GACACCTCTTGTTACCTCGTTATTCCTCAATAGAGGCTTAGATACAGAAGAAAAGATTGTGGACTTTTTAAATACAGAAA
AGCAAGAGTTTCATGATCCATTTTTACTTGAAGGTATGGACCGTACTGTAGAACGTGTGCAACAAGCGATTCAGAACGGC
GAGCAAATTTTAATTTTTGGTGATTATGATGCGGATGGTGTGAGTAGTACGACCGTCTTGTTTCTTGCTCTTCAAGAACT
GGGAGCAGATGTTGAGTTTTATATTCCAAACCGATTTACAGAAGGGTATGGACCGAATGAAGCAGCGTTTCGCTGGGCAC
ATGGTGCGGGATTCTCTCTGATCATTACTGTTGATACAGGAATTGCAGCTGTTCATGAAGCGCAGGTAGCGAAAGAGCTT
GGCATTGATCTAATTATTACGGATCATCACGAGCCACCGCCAGAGCTTCCTGAAGCATTGGCGATTATCCATCCAAAGCT
AGAGGGTGGTGTGTATCCGTTTCATTATTTAGCAGGTGTTGGTGTTGCATTCAAAGTAGCGCATGCATTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCTGTCATTGGTACAGTAGCAGATTTAGTATCGCTTCACGGCGAAAACCGATTGCTC
GTGCAGCGTGGGTTGAAACAAATGAGAGCAACAAAACGAGTTGGCTTACAAGCGTTATTTAAGGTAGGAAATATTTCGCA
AAATGAGATTACTGAAGAAAGTATTGGATTCTCACTTGCGCCGCGTATTAATGCGATCGGTCGCTTAGAAGATGCAGCTC
CAGCAGTTCATCTCCTTCTATCCGAAGATCCAGAAGAAGCGAGTGAGTTAGCAGCTGAAATTGACGAACTAAATAAGCTT
CGAAAAGATATTGTGAAGCAAATTACGGAAGAAGCAATTGCTGAAGTAGAAAACACCTATCCGCCAGAAAAGAATAAAGT
ATTAGTGTTGGCAAAAGAAGGATGGAATCCGGGTGTAATTGGAATTGTTGCTTCTAAATTGGTAGAGCGTTTTTATCGAC
CAACAATTATTTTAAATATCGATCCAGAGAAACAAACAGCAAAAGGATCGGCTCGAAGTATTGCTGGTTTTGATTTATTT
GCTAACTTATCGGATTGTAGAGAGTTATTGCCTCATTTTGGTGGACATCCGATGGCGGCAGGGATGACGCTTCATATGAA
TGATGTGGAGGAACTACGTCGCCGTTTGAATGAACAAGCAGAGGCTATTTTAACGGCAGAAGATTTCATTCCGATTACAA
CTGTTGATGCAATTTGTAAAGTAAAGGATGTAACACTTTCAGCAATTGAAGAAATGCAAAAACTCGCACCGTTTGGCGTT
GGGAATCCGAAGCCTCGTATTGCAGTGCAGGATGCGGAACTTGAAAGTATTCGTGCTATTGGTTCTGACGGTTCCCATTT
GAAAATGGCGCTTCGTGATGGGCAAGCAACGTTAGATACAATTGGTTTTGGTTTTGGTGCCTATGCGAAAGAAATTTCTC
CAGTCGCTCGTGTATCTGTTGTGGGGGAAGCGTCGATTAATGAATGGAATAATTTCCGAAAGCCGCAGCTTATGGTTCAG
GATATTGCTGTAAATGCTTGGCAATTATTTGATTGGCGTAGCATGCGTAATGTAGAAGTGAATATAGCGGAACTTTCACT
TGAAAGAGTAACAATGATATATTTTTCTGAAGAAGTATTGAACAAGTTTTCTTTAGAAACGTATAGGGAGCAACTGCAGC
ATGCTTCTGAAGTAACGGGGCTAGAAGATCGATACGTTGTATTGCTAGATTTGCCACCTACAACGGAAGAACTTAGTAAG
CTATTTACGGCTGGGTTCCCAGCGCGTATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACAATCCCAAC
AAGAGAACACTTTAAATGGTACTATTCCTTTTTACACCAAAAAGCACCATTTTCCCTGCGGCAACATGGCGAACAATTAT
GTCGTCATAAAGGGTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATAGCAGAAGAAATGAAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
ACTGCAATTAGAACAAGAATTGGTTTATAGCACGTATCAACAATTGTATACATGGTTTGAAAAGATTCGTAATCATAAAG
AAATATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.842

99.871

0.528