Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRE67_RS17650 Genome accession   NZ_CP128153
Coordinates   3554011..3554790 (-) Length   259 a.a.
NCBI ID   WP_286121529.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549011..3559790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS17625 (QRE67_17615) - 3549596..3550372 (-) 777 WP_286121524.1 isoprenyl transferase -
  QRE67_RS17630 (QRE67_17620) frr 3550458..3551015 (-) 558 WP_286121525.1 ribosome recycling factor -
  QRE67_RS17635 (QRE67_17625) pyrH 3551018..3551740 (-) 723 WP_286121526.1 UMP kinase -
  QRE67_RS17640 (QRE67_17630) tsf 3551807..3552697 (-) 891 WP_286121527.1 translation elongation factor Ts -
  QRE67_RS17645 (QRE67_17635) rpsB 3552778..3553479 (-) 702 WP_286121528.1 30S ribosomal protein S2 -
  QRE67_RS17650 (QRE67_17640) codY 3554011..3554790 (-) 780 WP_286121529.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRE67_RS17655 (QRE67_17645) hslU 3554867..3556258 (-) 1392 WP_286121530.1 ATP-dependent protease ATPase subunit HslU -
  QRE67_RS17660 (QRE67_17650) hslV 3556280..3556822 (-) 543 WP_286121531.1 ATP-dependent protease subunit HslV -
  QRE67_RS17665 (QRE67_17655) xerC 3556866..3557765 (-) 900 WP_286121532.1 tyrosine recombinase XerC -
  QRE67_RS17670 (QRE67_17660) trmFO 3557831..3559135 (-) 1305 WP_286121533.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.07 Da        Isoelectric Point: 4.7993

>NTDB_id=846351 QRE67_RS17650 WP_286121529.1 3554011..3554790(-) (codY) [Bacillus sp. DX3.1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
HVTETSSNLGVESQYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=846351 QRE67_RS17650 WP_286121529.1 3554011..3554790(-) (codY) [Bacillus sp. DX3.1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAACGCGTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCAGATACAATGTGTGAAGTAATTGAAGCAAACGTATTTGTTGTAAGCCGTCGCGGTAAATTATTAGGATATGCAATTC
ATCAACAAATCGAAAACGAACGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTT
CACGTAACAGAAACATCTTCAAACTTAGGTGTTGAAAGTCAATACACAGCATTTCCTGTCGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGCTTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTTTTAGATGATGATTTAATCCTTGCTGAGTATAGCTCTACTGTAGTAGGTATGGAAATTCTGCGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCTCGTAGCAAAGCAGTTGTTCAAATGGCAATCAGCTCATTATCATACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGTATTACTC
GTTCTGTAATCGTAAACGCACTTCGTAAATTAGAAAGTGCGGGCGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACG
TACATTAAAGTATTAAACGACAAGTTTTTACAAGAACTTGCGAAATTAAAAACTAACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

80.309

100

0.803
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456