Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | QRY64_RS22045 | Genome accession | NZ_CP128152 |
| Coordinates | 3810587..3811366 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus albus strain SXL388 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3778648..3833187 | 3810587..3811366 | within | 0 |
Gene organization within MGE regions
Location: 3778648..3833187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRY64_RS21895 (QRY64_21875) | - | 3778822..3779601 (+) | 780 | WP_286119885.1 | hypothetical protein | - |
| QRY64_RS21900 (QRY64_21880) | - | 3779628..3780245 (+) | 618 | WP_286119886.1 | hypothetical protein | - |
| QRY64_RS21905 (QRY64_21885) | - | 3780229..3780834 (+) | 606 | WP_286119887.1 | hypothetical protein | - |
| QRY64_RS21910 (QRY64_21890) | - | 3780980..3782527 (+) | 1548 | WP_071758793.1 | recombinase family protein | - |
| QRY64_RS21915 (QRY64_21895) | dpaB | 3782560..3782985 (-) | 426 | Protein_3803 | dipicolinate synthase subunit B | - |
| QRY64_RS21920 (QRY64_21900) | dpaA | 3782982..3783884 (-) | 903 | WP_286119888.1 | dipicolinic acid synthetase subunit A | - |
| QRY64_RS21925 (QRY64_21905) | - | 3784160..3784411 (-) | 252 | WP_001239747.1 | YlmC/YmxH family sporulation protein | - |
| QRY64_RS21930 (QRY64_21910) | - | 3784538..3785779 (-) | 1242 | WP_071758790.1 | pitrilysin family protein | - |
| QRY64_RS21935 (QRY64_21915) | - | 3785866..3786765 (-) | 900 | WP_071758789.1 | polysaccharide deacetylase family protein | - |
| QRY64_RS21940 (QRY64_21920) | pnp | 3786917..3789055 (-) | 2139 | WP_048530482.1 | polyribonucleotide nucleotidyltransferase | - |
| QRY64_RS21945 (QRY64_21925) | rpsO | 3789216..3789485 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| QRY64_RS21950 (QRY64_21930) | ribF | 3789586..3790557 (-) | 972 | WP_048530483.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| QRY64_RS21955 (QRY64_21935) | truB | 3790601..3791524 (-) | 924 | WP_048530484.1 | tRNA pseudouridine(55) synthase TruB | - |
| QRY64_RS21960 (QRY64_21940) | rbfA | 3791611..3791967 (-) | 357 | WP_000776444.1 | 30S ribosome-binding factor RbfA | - |
| QRY64_RS21965 (QRY64_21945) | - | 3791983..3792264 (-) | 282 | WP_071758788.1 | DUF503 family protein | - |
| QRY64_RS21970 (QRY64_21950) | infB | 3792261..3794321 (-) | 2061 | WP_048530488.1 | translation initiation factor IF-2 | - |
| QRY64_RS21975 (QRY64_21955) | - | 3794326..3794637 (-) | 312 | WP_001286518.1 | YlxQ family RNA-binding protein | - |
| QRY64_RS21980 (QRY64_21960) | - | 3794638..3794910 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| QRY64_RS21985 (QRY64_21965) | nusA | 3794922..3796028 (-) | 1107 | WP_000102596.1 | transcription termination factor NusA | - |
| QRY64_RS21990 (QRY64_21970) | rimP | 3796046..3796516 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| QRY64_RS21995 (QRY64_21975) | - | 3796849..3801150 (-) | 4302 | WP_071758787.1 | PolC-type DNA polymerase III | - |
| QRY64_RS22000 (QRY64_21980) | - | 3801275..3802975 (-) | 1701 | WP_071758786.1 | proline--tRNA ligase | - |
| QRY64_RS22005 (QRY64_21985) | rseP | 3803085..3804341 (-) | 1257 | WP_048530492.1 | RIP metalloprotease RseP | - |
| QRY64_RS22010 (QRY64_21990) | dxr | 3804358..3805500 (-) | 1143 | WP_016086609.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| QRY64_RS22015 (QRY64_21995) | cdsA | 3805524..3806315 (-) | 792 | WP_071758785.1 | phosphatidate cytidylyltransferase | - |
| QRY64_RS22020 (QRY64_22000) | uppS | 3806333..3807109 (-) | 777 | WP_048530497.1 | isoprenyl transferase | - |
| QRY64_RS22025 (QRY64_22005) | frr | 3807195..3807752 (-) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| QRY64_RS22030 (QRY64_22010) | pyrH | 3807755..3808477 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| QRY64_RS22035 (QRY64_22015) | tsf | 3808544..3809431 (-) | 888 | WP_002194822.1 | translation elongation factor Ts | - |
| QRY64_RS22040 (QRY64_22020) | rpsB | 3809535..3810236 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| QRY64_RS22045 (QRY64_22025) | codY | 3810587..3811366 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| QRY64_RS22050 (QRY64_22030) | hslU | 3811444..3812835 (-) | 1392 | WP_048530499.1 | ATP-dependent protease ATPase subunit HslU | - |
| QRY64_RS22055 (QRY64_22035) | hslV | 3812858..3813400 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| QRY64_RS22060 (QRY64_22040) | xerC | 3813444..3814343 (-) | 900 | WP_029439591.1 | tyrosine recombinase XerC | - |
| QRY64_RS22065 (QRY64_22045) | trmFO | 3814409..3815713 (-) | 1305 | WP_071716250.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QRY64_RS22070 (QRY64_22050) | topA | 3815764..3817842 (-) | 2079 | WP_071758783.1 | type I DNA topoisomerase | - |
| QRY64_RS22075 (QRY64_22055) | dprA | 3817987..3818856 (-) | 870 | WP_071758782.1 | DNA-processing protein DprA | - |
| QRY64_RS22080 (QRY64_22060) | sucD | 3818944..3819846 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| QRY64_RS22085 (QRY64_22065) | sucC | 3819866..3821026 (-) | 1161 | WP_016086604.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QRY64_RS22090 (QRY64_22070) | rnhB | 3821220..3821993 (-) | 774 | WP_048530506.1 | ribonuclease HII | - |
| QRY64_RS22095 (QRY64_22075) | ylqF | 3822045..3822926 (-) | 882 | WP_071758781.1 | ribosome biogenesis GTPase YlqF | - |
| QRY64_RS22100 (QRY64_22080) | lepB | 3822947..3823498 (-) | 552 | WP_048530509.1 | signal peptidase I | - |
| QRY64_RS22105 (QRY64_22085) | rplS | 3823602..3823946 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| QRY64_RS22110 (QRY64_22090) | trmD | 3824093..3824827 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QRY64_RS22115 (QRY64_22095) | rimM | 3824827..3825342 (-) | 516 | WP_048530513.1 | ribosome maturation factor RimM | - |
| QRY64_RS22120 (QRY64_22100) | - | 3825464..3825691 (-) | 228 | WP_048530518.1 | KH domain-containing protein | - |
| QRY64_RS22125 (QRY64_22105) | rpsP | 3825706..3825978 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| QRY64_RS22130 (QRY64_22110) | ffh | 3826079..3827428 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| QRY64_RS22135 (QRY64_22115) | - | 3827441..3827773 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| QRY64_RS22140 (QRY64_22120) | ftsY | 3827907..3828896 (-) | 990 | WP_071758780.1 | signal recognition particle-docking protein FtsY | - |
| QRY64_RS22145 (QRY64_22125) | smc | 3828912..3832481 (-) | 3570 | WP_286119889.1 | chromosome segregation protein SMC | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=846301 QRY64_RS22045 WP_000421288.1 3810587..3811366(-) (codY) [Bacillus albus strain SXL388]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=846301 QRY64_RS22045 WP_000421288.1 3810587..3811366(-) (codY) [Bacillus albus strain SXL388]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |