Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V3O04_RS00275 Genome accession   NZ_CP144242
Coordinates   60788..62053 (+) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SRM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55788..67053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O04_RS00245 (V3O04_00245) mutY 55958..56992 (-) 1035 WP_001113875.1 A/G-specific adenine glycosylase -
  V3O04_RS00250 (V3O04_00250) - 57133..57495 (-) 363 WP_000130110.1 HIT family protein -
  V3O04_RS00255 (V3O04_00255) - 57681..58418 (-) 738 WP_000100766.1 dienelactone hydrolase family protein -
  V3O04_RS00260 (V3O04_00260) - 58590..58748 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  V3O04_RS00265 (V3O04_00265) - 58943..59401 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  V3O04_RS00270 (V3O04_00270) - 59511..60683 (+) 1173 WP_000986274.1 PQQ-dependent sugar dehydrogenase -
  V3O04_RS00275 (V3O04_00275) rarA 60788..62053 (+) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  V3O04_RS00280 (V3O04_00280) - 62069..62908 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  V3O04_RS00285 (V3O04_00285) - 63194..63397 (-) 204 WP_000418559.1 hypothetical protein -
  V3O04_RS00290 (V3O04_00290) purC 63590..64309 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  V3O04_RS00295 (V3O04_00295) - 64347..64949 (-) 603 WP_001177091.1 hypothetical protein -
  V3O04_RS00300 (V3O04_00300) dapA 64965..65858 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  V3O04_RS00305 (V3O04_00305) pncA 66188..66832 (+) 645 WP_025465870.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=846200 V3O04_RS00275 WP_001285406.1 60788..62053(+) (rarA) [Acinetobacter baumannii strain SRM3]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=846200 V3O04_RS00275 WP_001285406.1 60788..62053(+) (rarA) [Acinetobacter baumannii strain SRM3]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375