Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMG68_RS23385 Genome accession   NZ_AP027188
Coordinates   4460998..4461465 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain PV0838     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4455998..4466465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG68_RS23340 (PV0838_4484) rplP 4456108..4456518 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QMG68_RS23345 (PV0838_4485) rpsC 4456531..4457232 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QMG68_RS23350 (PV0838_4486) rplV 4457250..4457582 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QMG68_RS23355 (PV0838_4487) rpsS 4457597..4457875 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QMG68_RS23360 (PV0838_4488) rplB 4457892..4458713 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QMG68_RS23365 (PV0838_4489) rplW 4458731..4459033 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QMG68_RS23370 (PV0838_4490) rplD 4459030..4459635 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QMG68_RS23375 (PV0838_4491) rplC 4459646..4460275 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QMG68_RS23380 (PV0838_4492) rpsJ 4460308..4460619 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QMG68_RS23385 (PV0838_4493) pilD 4460998..4461465 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  QMG68_RS23390 (PV0838_4494) bfr 4461462..4461938 (-) 477 WP_000675515.1 bacterioferritin -
  QMG68_RS23395 (PV0838_4495) bfd 4462011..4462205 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QMG68_RS23400 (PV0838_4496) tuf 4462388..4463572 (-) 1185 WP_000031783.1 elongation factor Tu -
  QMG68_RS23405 (PV0838_4497) fusA 4463643..4465757 (-) 2115 WP_000124700.1 elongation factor G -
  QMG68_RS23410 (PV0838_4498) rpsG 4465854..4466324 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=84619 QMG68_RS23385 WP_000339836.1 4460998..4461465(+) (pilD) [Escherichia coli strain PV0838]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=84619 QMG68_RS23385 WP_000339836.1 4460998..4461465(+) (pilD) [Escherichia coli strain PV0838]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment