Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QRD90_RS18000 Genome accession   NZ_CP128118
Coordinates   3736222..3738627 (-) Length   801 a.a.
NCBI ID   WP_286128734.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LN4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3731222..3743627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS17975 (QRD90_17970) - 3732692..3733768 (-) 1077 WP_095389837.1 AI-2E family transporter -
  QRD90_RS17980 (QRD90_17975) - 3733995..3734210 (-) 216 WP_034311361.1 hypothetical protein -
  QRD90_RS17985 (QRD90_17980) - 3734200..3734658 (-) 459 WP_286128731.1 PRC-barrel domain-containing protein -
  QRD90_RS17990 (QRD90_17985) - 3734797..3735570 (-) 774 WP_286128732.1 TPM domain-containing protein -
  QRD90_RS17995 (QRD90_17990) - 3735570..3736136 (-) 567 WP_286128733.1 LemA family protein -
  QRD90_RS18000 (QRD90_17995) recD2 3736222..3738627 (-) 2406 WP_286128734.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QRD90_RS18005 (QRD90_18000) - 3738664..3739329 (-) 666 WP_286128735.1 tetratricopeptide repeat protein -
  QRD90_RS18010 (QRD90_18005) mnmA 3739451..3740566 (-) 1116 WP_286128736.1 tRNA 2-thiouridine(34) synthase MnmA -
  QRD90_RS18015 (QRD90_18010) - 3740596..3741741 (-) 1146 WP_286128737.1 cysteine desulfurase family protein -
  QRD90_RS18020 (QRD90_18015) - 3741802..3742221 (-) 420 WP_286128738.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90350.11 Da        Isoelectric Point: 4.7652

>NTDB_id=846100 QRD90_RS18000 WP_286128734.1 3736222..3738627(-) (recD2) [Peribacillus frigoritolerans strain LN4]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPKMHEDEIYIFYGAMKEHPRFG
LQFHVENFRKDLPQSKVGIVSYLSGDLFKGIGKKTAESIVDTLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKVYQMYKQDTISIIQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRERIEFTNISSEIIELTEEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSGGFSHDEDNQLDGRIVIIDEVSMVDTWLANQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=846100 QRD90_RS18000 WP_286128734.1 3736222..3738627(-) (recD2) [Peribacillus frigoritolerans strain LN4]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACCGGTTATTTTCCAAAGATGCATGAGGACGAAATCTATATTTTTTATGGGGCAATGAAGGAACATCCGCGTTTTGGC
CTTCAATTTCATGTTGAGAATTTTCGCAAGGACCTGCCCCAATCCAAGGTAGGCATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGATACGCTAGGGGAAAAGGCCATTTCCAAGATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCTGGCGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGTTTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGGTTTATCAAATGTATAA
GCAGGATACGATTTCGATAATTCAGGGAAATCCGTATAAGCTTGTGGAAGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTCGGGATTTCCGGCAGCCACCCCGATCGAATCAAGGCTGCGTGTTTGTATACGCTTGAGTCG
CAGTGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAGCGGCTGCTTGAGGAAAATAA
ACGGGAACGAATCGAATTCACGAACATTTCCTCGGAAATAATCGAATTGACTGAAGAAGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCTCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAACGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCGATGCTAATCTTGACGGGCGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTTACGATTCACCGTTTGCTGGGGTGGAACGGGAGTGGAGGCTTTTCTCATGATGAGGATAATCAGCTGGATGGCCGGA
TCGTGATCATCGATGAGGTTTCGATGGTGGACACTTGGCTGGCCAATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTAGGCGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGTATCGAAGTGACATACACGAAGCAGGATTTGAACCAGATTACACATGCCTATTGTTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTTCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAAATGCCGGTCGAAAAGGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624