Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   QRD88_RS14640 Genome accession   NZ_CP128114
Coordinates   2814104..2816395 (-) Length   763 a.a.
NCBI ID   WP_024425943.1    Uniprot ID   A0A5C0WIX2
Organism   Bacillus safensis strain G6S3     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 2809104..2821395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS14600 (QRD88_14595) - 2809510..2809941 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  QRD88_RS14605 (QRD88_14600) - 2809941..2810282 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  QRD88_RS14610 (QRD88_14605) - 2810275..2811753 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  QRD88_RS14615 (QRD88_14610) - 2811760..2812239 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  QRD88_RS14620 (QRD88_14615) - 2812239..2812520 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  QRD88_RS14625 (QRD88_14620) mnhG 2812504..2812878 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  QRD88_RS14630 (QRD88_14625) - 2812969..2813358 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  QRD88_RS14635 (QRD88_14630) comA 2813382..2814023 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  QRD88_RS14640 (QRD88_14635) comP 2814104..2816395 (-) 2292 WP_024425943.1 ATP-binding protein Regulator
  QRD88_RS14645 (QRD88_14640) comX 2816409..2816582 (-) 174 WP_024425944.1 competence pheromone ComX -
  QRD88_RS14650 (QRD88_14645) - 2816560..2817483 (-) 924 WP_024425945.1 polyprenyl synthetase family protein -
  QRD88_RS14655 (QRD88_14650) degQ 2817635..2817775 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QRD88_RS14660 (QRD88_14655) - 2818281..2818637 (+) 357 WP_024425946.1 hypothetical protein -
  QRD88_RS14665 (QRD88_14660) - 2818673..2819899 (-) 1227 WP_212051393.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 88009.32 Da        Isoelectric Point: 7.0526

>NTDB_id=845980 QRD88_RS14640 WP_024425943.1 2814104..2816395(-) (comP) [Bacillus safensis strain G6S3]
MQKFYSKLTVILMILSFIYVIYISYINVFNIFVGAVVSVNSDGQLEIEDVVDFTDSYYAGVRKGDIILEVNGNKEPTEEV
RRGYLANVKSLVVDRHGDEIEIENVSLLSQENLFIYIIPIIFYSICLFCIFMILKINKSRKKESAYILALFLLAVAVAYV
SSGGSGKGEYISSFVVIFTMTSVPSLYMHFMYQYLKELGTVIISWRVLLCLYAVPFINIVLEILFKNMVLAAFNLLSFFA
LAFITIIITLRAAKKLKGTEIGNVLSAFALILISSFSPFMLFFIIPYLFHKYFISPYILASFALLIPFFLVYQFMTNKLY
NVDFFLGRIKYYSLLAITPTIAVVVIFDFIQKPSANFYTMKFTIITYILMLTVFYFKEIIDFRFRLKRFSEKHNYQDSVF
KFTQLIREASSLHQVFYHLKYTILEVLVVNKAFVLEVKADGQVEEIDESTEDSKLWKKYVDQFQELLGEVGKIIALDKGF
MMKIGERGGHSFVICCLSNLRTPKLSRDEISWLKTLAFYTSVSLENVVKIEELMEHLDDLKQREANPAWLKKIMFAMEEK
QRSDLARDLHDSVLQDLISLKRQSEMFLTNFQNNQCPTSIENSLISWNDQMSKVIQTTRETCHELRPQLLYDLGLVKAIS
KLTSQIQEEAPFHIRLNTTRFDKELDIDIDSQLNIYRIVQELLSNALKHSKATQVLVMLICIKDQVVLHYEDDGVGFDAS
HLDQHTMSMGLSGIRERVKALNGKLQIHTAPEKGLKVKIEMEL

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=845980 QRD88_RS14640 WP_024425943.1 2814104..2816395(-) (comP) [Bacillus safensis strain G6S3]
ATGCAAAAATTTTACTCGAAATTAACTGTTATATTAATGATCCTTAGCTTTATTTATGTGATTTATATTTCCTACATCAA
TGTGTTTAATATTTTTGTAGGAGCAGTCGTTTCGGTGAATAGTGACGGCCAACTTGAAATAGAGGATGTTGTTGATTTTA
CAGACAGCTATTATGCTGGTGTTAGGAAAGGCGATATCATCCTTGAAGTGAACGGTAACAAAGAACCAACCGAAGAAGTA
AGACGAGGTTATTTAGCGAATGTCAAGAGTTTAGTTGTTGATAGACATGGTGATGAAATTGAAATAGAGAATGTAAGCTT
ATTAAGTCAAGAAAATCTGTTTATTTATATAATACCTATCATTTTTTATTCGATCTGTCTATTCTGTATATTTATGATTT
TAAAAATCAATAAATCTAGGAAAAAAGAGTCTGCATATATTCTAGCTCTCTTTTTGCTAGCTGTTGCTGTAGCCTATGTA
AGCTCTGGCGGCTCTGGTAAAGGGGAATATATTAGCAGCTTTGTCGTAATTTTTACGATGACTAGTGTACCGTCGTTATA
TATGCACTTTATGTATCAATATTTAAAGGAATTAGGAACGGTAATTATTAGTTGGCGTGTACTTCTTTGTTTGTATGCCG
TCCCTTTTATAAATATTGTATTAGAAATTCTGTTTAAAAATATGGTTTTAGCTGCTTTTAACTTACTTTCATTCTTTGCA
CTTGCATTTATTACGATTATTATCACATTAAGGGCTGCTAAAAAGTTGAAAGGGACTGAAATCGGAAATGTCCTTAGTGC
CTTTGCACTTATCTTGATCTCATCATTCAGTCCATTTATGCTATTTTTTATTATTCCTTATTTATTTCATAAATATTTTA
TTTCACCTTATATCCTAGCATCGTTCGCTTTATTGATTCCGTTTTTCTTAGTCTATCAATTTATGACAAATAAATTATAT
AATGTTGATTTCTTTTTGGGGAGAATCAAATATTATAGTCTTTTAGCCATCACACCTACTATAGCGGTAGTCGTTATATT
TGATTTCATTCAGAAGCCAAGTGCTAACTTTTATACAATGAAATTTACGATTATCACGTATATTCTTATGCTCACTGTCT
TCTATTTTAAAGAAATCATCGACTTCCGTTTTCGATTGAAGCGTTTTTCAGAGAAGCATAATTATCAAGATAGCGTGTTT
AAATTCACGCAGCTCATTCGTGAGGCGTCATCACTTCACCAAGTGTTCTATCATTTAAAATACACCATTTTAGAAGTACT
TGTTGTGAACAAAGCCTTTGTGCTTGAAGTGAAGGCAGATGGACAGGTTGAAGAGATTGATGAATCTACAGAGGACAGTA
AGCTATGGAAAAAGTATGTAGACCAATTTCAGGAATTATTAGGTGAAGTTGGAAAAATTATTGCGCTTGATAAAGGATTC
ATGATGAAAATTGGTGAGCGGGGCGGTCACTCTTTTGTGATTTGTTGTTTATCTAATTTACGGACACCGAAATTGTCGCG
TGATGAGATTTCTTGGTTGAAAACATTGGCCTTTTATACAAGTGTCAGTTTAGAAAATGTTGTCAAAATCGAAGAGTTGA
TGGAGCATCTTGACGATTTGAAACAGCGTGAGGCCAATCCTGCCTGGCTGAAGAAAATCATGTTTGCTATGGAAGAGAAG
CAGCGTTCAGATTTAGCGAGAGATCTTCATGATTCCGTGCTGCAGGACTTGATATCACTAAAAAGGCAGTCGGAGATGTT
TTTAACGAATTTCCAAAACAACCAATGCCCTACATCTATTGAAAATTCGCTTATCTCATGGAATGATCAAATGTCCAAAG
TGATTCAAACGACGAGAGAAACGTGTCATGAGCTTCGCCCGCAGCTGCTGTATGATTTAGGTTTAGTAAAGGCGATATCG
AAGCTGACTTCTCAAATTCAGGAGGAAGCGCCGTTTCATATTAGGCTGAATACGACACGCTTTGATAAAGAATTGGACAT
TGATATTGATTCACAGCTGAATATTTACCGAATTGTTCAGGAGCTGTTATCCAATGCCCTGAAGCATTCGAAAGCCACTC
AAGTGTTAGTGATGCTGATTTGTATTAAAGATCAGGTTGTTCTTCACTATGAGGATGATGGAGTCGGTTTTGATGCAAGT
CATCTTGATCAGCACACAATGAGCATGGGGCTATCGGGAATTAGAGAACGAGTGAAAGCGTTAAATGGAAAGCTTCAAAT
TCACACAGCCCCGGAAAAAGGGCTTAAGGTGAAAATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5C0WIX2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

49.229

100

0.502