Detailed information NTG0845972

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: QRD88_RS12320
• Genome accession: NZ_CP128114
• Coordinates: 2377848..2380232 (-)
• Length: 794 a.a.
• NCBI ID: WP_024423121.1
• Uniprot ID: -
• Organism: Bacillus safensis strain G6S3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2372848..2385232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRD88_RS12285 (QRD88_12280)	-	2373810..2374538 (+)	729	WP_024423116.1	amino acid ABC transporter ATP-binding protein	-
QRD88_RS12290 (QRD88_12285)	-	2374552..2375361 (+)	810	WP_025092422.1	transporter substrate-binding domain-containing protein	-
QRD88_RS12295 (QRD88_12290)	-	2375439..2376092 (+)	654	WP_024423118.1	amino acid ABC transporter permease	-
QRD88_RS12300 (QRD88_12295)	-	2376108..2376758 (+)	651	WP_024427867.1	amino acid ABC transporter permease	-
QRD88_RS12305 (QRD88_12300)	-	2376862..2376993 (-)	132	WP_003216198.1	YrzQ family protein	-
QRD88_RS12310 (QRD88_12305)	-	2377014..2377205 (-)	192	WP_003216308.1	hypothetical protein	-
QRD88_RS12315 (QRD88_12310)	-	2377219..2377737 (-)	519	WP_056767970.1	hypothetical protein	-
QRD88_RS12320 (QRD88_12315)	recD2	2377848..2380232 (-)	2385	WP_024423121.1	ATP-dependent RecD-like DNA helicase	Machinery gene
QRD88_RS12325 (QRD88_12320)	-	2380252..2380905 (-)	654	WP_056767976.1	tetratricopeptide repeat protein	-
QRD88_RS12330 (QRD88_12325)	mnmA	2380965..2382083 (-)	1119	WP_024423123.1	tRNA 2-thiouridine(34) synthase MnmA	-
QRD88_RS12335 (QRD88_12330)	-	2382178..2383320 (-)	1143	WP_044331688.1	cysteine desulfurase family protein	-
QRD88_RS12340 (QRD88_12335)	-	2383339..2383758 (-)	420	WP_024423125.1	Rrf2 family transcriptional regulator	-
QRD88_RS12345 (QRD88_12340)	-	2383967..2385232 (+)	1266	WP_025092426.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89073.59 Da
• Isoelectric Point: 5.2068

>NTDB_id=845972 QRD88_RS12320 WP_024423121.1 2377848..2380232(-) (recD2) [Bacillus safensis strain G6S3]
MQEHPDQMKLEDEPFLKGTIQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKEMIIEDDRCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASKAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSADQMKEVI
EKVVSNAAQKGFSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEQIMDAELEALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=845972 QRD88_RS12320 WP_024423121.1 2377848..2380232(-) (recD2) [Bacillus safensis strain G6S3]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACCATTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTAAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCCGCACTTCATGAGGAGGAAACCTACACCTTTTATGGCAAAGTGACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTGCCGACAACGAAGCAAGGCATCATACATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGAAAAAAGACGGCGGAAGAAATTGTGGGACAGCTTGGCAATCAGACGCTTCATAAGATTATGCGTGACC
CAGCTGTTTTGTATGATGTACCGCGCTTATCAAAAAAGAAGGCGGATAAGCTTGCCGCAGCGCTTCAGGAGCATCAAGGG
CTGGAACAAATCATGATCAGCCTGAATCAGTATGGCTTTGGTCCGCAGCTCAGCATGAAGATTTACCAAGTATACGAGAG
TGAAACACTGCAGAAAATCGAGGAAAATCCCTATCAGCTCGTTAAGGATGTTGAGGGAATCGGGTTTATTAAGGCGGATG
AGCTTGGCGCTAGAACAGGCATCTCAGGAAATGACCCAGAACGGATTCGCGCCGCCTTGCTATATACAGTGGAGACAGCC
AGTCTACAAGACGGTCATACGTACATACAAACGAAAGATTTGATCGTCGAAACCCGCAAGCTGCTCAACCAAACCGGCAA
TGATTACAAAGTGACTGAAATGGATGTTGCCAATCAGATCATTGCACTTGGCGAAGGAAAAGAAATGATCATTGAAGATG
ACCGCTGCTATCATCCATCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGCATTCAAAAAATCGTCTCCCAAACAGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTGCTAGCACTTGGCGAGCTGGAGGAGCGGTTAGGCGTCCAATATGCACC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGGCCTGGAACAGGGAAGACGA
CGGTCATTAAAGGAATTGTCGAGCTTTACAGTGATCTTCACGGTGTTTCTCTTGATCCGAGTGATTATAAAAAAGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGACGGGCGGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTCAC
CATTCACCGGCTGCTAGGCTGGAACGGTTCGGAGGGCTTCTCTCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCATTTGTTTAAAGCCATTCCTGATCATATCCAAGTGATT
ATGGTAGGGGATGAACATCAGCTGCCATCTGTCGGACCAGGCCAAGTTTTACGGGATTTGCTTGCCTCAAAAGCCGTGCC
GGCTGTTACCCTGACAGATATTTACCGGCAGGCAGACGGCTCAACCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TGCTGCCAAAGGATATCACTGCACGCTCAAAGGATCGGTCCTTCATTCAGTGTTCAGCTGATCAAATGAAAGAAGTTATT
GAGAAAGTTGTCAGCAATGCTGCTCAAAAAGGGTTTTCAGCAAAGGATATTCAAGTGCTGGCACCGATGTATAAAGGAAA
AGCAGGCATCAATGAGCTCAACAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACAGGTGATAAGGTGCTTCAGCTTGTGAATCAGCCGGAGAACAACATTTTTAACGGCGATATC
GGTGAAATTGTCTCGATTTTTTATGCAAAAGAAAATACAGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGAAATGA
AATCACCTTTACAAAAAAAGATTTTCATCAATTTACACATGCTTATTGCTGCTCTATTCACAAATCACAAGGAAGTGAAT
TCCCGATTGTTGTGCTGCCAGTCGTGAGGAGCTACTACCGAATGCTTCGGCGGAATCTGCTGTACACAGCCATTACACGC
AGTAAAAAGTTTTTAATACTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTAGTACAAACCGAACAAATCATGGATGCAGAACTTGAAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCATTTGATTTTATGCATGAGTAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.648	100	0.798