Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRD88_RS07895 Genome accession   NZ_CP128114
Coordinates   1542632..1543411 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain G6S3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537632..1548411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS07875 (QRD88_07870) trmFO 1538336..1539640 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QRD88_RS07880 (QRD88_07875) xerC 1539703..1540620 (+) 918 WP_208945819.1 tyrosine recombinase XerC -
  QRD88_RS07885 (QRD88_07880) hslV 1540635..1541180 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  QRD88_RS07890 (QRD88_07885) hslU 1541197..1542597 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  QRD88_RS07895 (QRD88_07890) codY 1542632..1543411 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRD88_RS07900 (QRD88_07895) flgB 1543700..1544089 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  QRD88_RS07905 (QRD88_07900) flgC 1544089..1544541 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  QRD88_RS07910 (QRD88_07905) fliE 1544553..1544870 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  QRD88_RS07915 (QRD88_07910) fliF 1544920..1546512 (+) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  QRD88_RS07920 (QRD88_07915) fliG 1546524..1547540 (+) 1017 WP_058837706.1 flagellar motor switch protein FliG -
  QRD88_RS07925 (QRD88_07920) fliH 1547533..1548297 (+) 765 WP_047202159.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=845960 QRD88_RS07895 WP_007499612.1 1542632..1543411(+) (codY) [Bacillus safensis strain G6S3]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=845960 QRD88_RS07895 WP_007499612.1 1542632..1543411(+) (codY) [Bacillus safensis strain G6S3]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471