Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRX95_RS08115 Genome accession   NZ_CP128112
Coordinates   1544820..1545422 (-) Length   200 a.a.
NCBI ID   WP_002166063.1    Uniprot ID   J8I015
Organism   Bacillus mycoides strain G5S2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539820..1550422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX95_RS08095 (QRX95_08095) dnaD 1540135..1540842 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  QRX95_RS08100 (QRX95_08100) nth 1540858..1541505 (+) 648 WP_000933020.1 endonuclease III -
  QRX95_RS08105 (QRX95_08105) - 1541509..1542027 (+) 519 WP_002086586.1 YpoC family protein -
  QRX95_RS08110 (QRX95_08110) - 1542054..1544753 (-) 2700 WP_002166064.1 penicillin-binding protein 1A -
  QRX95_RS08115 (QRX95_08115) recU 1544820..1545422 (-) 603 WP_002166063.1 Holliday junction resolvase RecU Machinery gene
  QRX95_RS08120 (QRX95_08120) - 1545526..1546551 (+) 1026 WP_002166062.1 DUF2515 domain-containing protein -
  QRX95_RS27235 - 1546895..1547041 (-) 147 WP_307838389.1 phage portal protein -
  QRX95_RS08125 (QRX95_08125) - 1547160..1547402 (+) 243 WP_002011865.1 hypothetical protein -
  QRX95_RS08130 (QRX95_08130) - 1547418..1547762 (+) 345 WP_002011864.1 YppE family protein -
  QRX95_RS08135 (QRX95_08135) - 1547941..1548132 (-) 192 WP_002030817.1 YppF family protein -
  QRX95_RS08140 (QRX95_08140) - 1548310..1548948 (+) 639 WP_002086577.1 YppG family protein -
  QRX95_RS08145 (QRX95_08145) - 1549105..1549530 (+) 426 WP_002166061.1 CotD family spore coat protein -
  QRX95_RS08150 (QRX95_08150) - 1549587..1550141 (+) 555 WP_002166060.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23324.55 Da        Isoelectric Point: 9.5600

>NTDB_id=845901 QRX95_RS08115 WP_002166063.1 1544820..1545422(-) (recU) [Bacillus mycoides strain G5S2]
MTIRYPNGKRYDQASQPHKTPIKKNTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=845901 QRX95_RS08115 WP_002166063.1 1544820..1545422(-) (recU) [Bacillus mycoides strain G5S2]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAAAATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACTAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I015

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.745

100

0.64