Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRD87_RS08585 Genome accession   NZ_CP128109
Coordinates   1648516..1649295 (+) Length   259 a.a.
NCBI ID   WP_041507309.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643516..1654295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS08565 (QRD87_08565) trmFO 1644220..1645524 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QRD87_RS08570 (QRD87_08570) xerC 1645587..1646504 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  QRD87_RS08575 (QRD87_08575) hslV 1646519..1647064 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  QRD87_RS08580 (QRD87_08580) hslU 1647081..1648481 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  QRD87_RS08585 (QRD87_08585) codY 1648516..1649295 (+) 780 WP_041507309.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRD87_RS08590 (QRD87_08590) flgB 1649586..1649975 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  QRD87_RS08595 (QRD87_08595) flgC 1649975..1650427 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  QRD87_RS08600 (QRD87_08600) fliE 1650439..1650756 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  QRD87_RS08605 (QRD87_08605) fliF 1650807..1652399 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  QRD87_RS08610 (QRD87_08610) fliG 1652411..1653427 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  QRD87_RS08615 (QRD87_08615) fliH 1653420..1654184 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29034.27 Da        Isoelectric Point: 4.6614

>NTDB_id=845847 QRD87_RS08585 WP_041507309.1 1648516..1649295(+) (codY) [Bacillus altitudinis strain D9_B_49]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=845847 QRD87_RS08585 WP_041507309.1 1648516..1649295(+) (codY) [Bacillus altitudinis strain D9_B_49]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGTTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAAAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAGATTGCAGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471