Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   VXF94_RS17595 Genome accession   NZ_CP143956
Coordinates   3407058..3409415 (+) Length   785 a.a.
NCBI ID   WP_014472156.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3402058..3414415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS17575 (VXF94_17575) rnhC 3403346..3404287 (-) 942 WP_013353114.1 ribonuclease HIII -
  VXF94_RS17580 (VXF94_17580) zapA 3404421..3404678 (+) 258 WP_003152533.1 cell division protein ZapA -
  VXF94_RS17585 (VXF94_17585) - 3404686..3405219 (+) 534 WP_013353113.1 CvpA family protein -
  VXF94_RS17590 (VXF94_17590) polX 3405325..3407037 (+) 1713 WP_014472157.1 DNA polymerase/3'-5' exonuclease PolX -
  VXF94_RS17595 (VXF94_17595) mutS/mutS2 3407058..3409415 (+) 2358 WP_014472156.1 endonuclease MutS2 Machinery gene
  VXF94_RS17600 (VXF94_17600) - 3409432..3409836 (+) 405 WP_003152541.1 DUF350 domain-containing protein -
  VXF94_RS17605 (VXF94_17605) - 3409977..3410654 (-) 678 WP_014472154.1 DUF2711 family protein -
  VXF94_RS17610 (VXF94_17610) - 3410760..3412448 (+) 1689 WP_013353109.1 AMP-binding protein -
  VXF94_RS17615 (VXF94_17615) - 3412539..3413123 (+) 585 WP_014470798.1 TetR/AcrR family transcriptional regulator -
  VXF94_RS17620 (VXF94_17620) - 3413137..3413916 (+) 780 WP_013353107.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87412.75 Da        Isoelectric Point: 6.3218

>NTDB_id=845637 VXF94_RS17595 WP_014472156.1 3407058..3409415(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain Fad 108]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADIQKQLDEVEEASAIMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDFIFAKARYAKAMKATKPFMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYTTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHMVNIV
SILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEQSKKRADEELSETESIRKEAEKLHKELQQQIIE
LNAQKDKLMEEAEQKAAEKLEDAAKEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=845637 VXF94_RS17595 WP_014472156.1 3407058..3409415(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain Fad 108]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CCGGGAAAAGCTTCTGCAGCTGAAGCCTTTGACTGATCTCGCCGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CCGCGATCATGCGCTTAAGAGGCCATGCTCCGTTCGGCGGTCTGACCGATATAAGATCGGCTTTGCGTCGGGCGGAAATC
GGCAGCGTGCTGACCCCGGCGGAATTCACCGAATTGTCCGGGCTGCTGTATGCCGTTAAGCAAATGAAGCACTTTATCAG
TCAAATGACAGAAGACGGCGTCAGCATTCCGCTGATCCAGGCCCATGCAGAAGAGCTGATTACATTGGGCGATTTGGAAA
GGGAGATTAATTCCTGCATTGATGATCACGGCGAAGTGCTTGATCATGCATCTCCCGCTTTAAGAGGAATCCGCACGCAG
CTCAGAACGCTTGAATCAAGAGTGAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCAAAAATGCTGTCTGA
CACGATCGTTACGATTCGGAATGACCGCTTTGTCATTCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGGATCGTGC
ATGATACTTCTTCATCAGGTGCGACGCTGTTTATTGAACCGCAGGCGATCGTCGATATGAACAACTCGCTTCAGCAGGCG
AAGGTGAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAGATTGT
TCAAAATGTGGAAGTGCTGCAGACGCTGGATTTCATTTTCGCAAAAGCGAGATACGCAAAAGCGATGAAGGCGACAAAAC
CGTTTATGAACGGAGACGGCTTTATCCGTCTGAAAAAAGCGCGCCATCCGCTGCTGCCTCAAGATCAAGTCGTGGCCAAC
GACATTGAACTGGGCGGAGATTATACGACGATCGTTATCACGGGTCCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
GCTCGGGCTGCTGACGATAATGGCGCAGGCAGGACTGCACATACCGGCTGATGAAGGATCGGAAGCCGCCGTATTTGATC
ATGTTTTTGCCGATATCGGTGATGAACAGTCGATCGAACAAAGCCTGAGTACGTTCTCATCTCACATGGTCAATATCGTC
AGTATTTTAAAAGACGTGTCCGAAAACAGTCTTGTGCTGTTTGATGAACTCGGTGCCGGAACCGACCCGCAGGAAGGGGC
GGCGCTTGCCATGAGCATTCTTGACGAAGTCCACCGGACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAGCTGA
AAGCATACGGATATAACAGACAAGGCGTCATGAATGCAAGCGTTGAATTTGATATTGAAACGCTTTCGCCGACCTACAAG
CTCCTGATCGGAGTGCCGGGCCGAAGCAACGCTTTTGAAATCTCAAGACGCCTCGGCCTGCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACACAATGAAGTCGATCTGATGATCGCGTCACTTGAACAAAGTAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCAATCAGAAAAGAAGCAGAAAAACTGCATAAAGAGCTGCAGCAGCAAATCATTGAG
CTGAACGCCCAGAAAGACAAACTGATGGAAGAAGCCGAACAAAAAGCAGCGGAAAAACTGGAAGACGCCGCAAAAGAAGC
AGAACAGATCATTCGCGAGCTCCGGTCTATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGATGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTGAAG
CCGGGTGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAAAAAACCGGCGAGAAAGAATGGAATGT
CCAAATCGGCATCCTTAAAATGAAGGTGAAGGAAAAAGACCTTGAGTTTCTCAAGTCCGCTCCTGAACCGAAAAAAGAAA
AAGCCATCACCGCCGTAAAAGGGAAGGATTATCACGTGTCCCTTGAACTTGACCTGCGGGGAGAGCGTTACGAAAATGCC
CTCAGCCGCGTCGAAAAATATTTAGATGACGCGGTGCTTGCCGGCTATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
AGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)

MutS domain V (MutS_V)

(331-512)

Smr domain (Smr)

(710-785)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.771

100

0.878