Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   VXF94_RS02885 Genome accession   NZ_CP143956
Coordinates   626071..626520 (-) Length   149 a.a.
NCBI ID   WP_013352152.1    Uniprot ID   A0A9P1NHL6
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 621071..631520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS02855 (VXF94_02855) sepM 621171..622193 (-) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator
  VXF94_RS02860 (VXF94_02860) - 622199..622978 (-) 780 WP_013352156.1 patatin-like phospholipase family protein -
  VXF94_RS02865 (VXF94_02865) ylbJ 623156..624382 (+) 1227 WP_014471810.1 sporulation integral membrane protein YlbJ -
  VXF94_RS02870 (VXF94_02870) coaD 624400..624882 (-) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  VXF94_RS02875 (VXF94_02875) rsmD 624887..625441 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VXF94_RS02880 (VXF94_02880) - 625740..626012 (-) 273 WP_013352153.1 YlbG family protein -
  VXF94_RS02885 (VXF94_02885) ylbF 626071..626520 (-) 450 WP_013352152.1 YlbF family regulator Regulator
  VXF94_RS02890 (VXF94_02890) - 626592..626831 (-) 240 WP_003154475.1 YlbE-like family protein -
  VXF94_RS02895 (VXF94_02895) - 626847..627257 (-) 411 WP_013352151.1 YlbD family protein -
  VXF94_RS02900 (VXF94_02900) - 627429..628469 (-) 1041 WP_014471808.1 CAP domain-containing protein -
  VXF94_RS02905 (VXF94_02905) - 628554..628997 (-) 444 WP_013352149.1 CBS domain-containing protein -
  VXF94_RS02910 (VXF94_02910) - 629138..629497 (+) 360 WP_013352148.1 YugN family protein -
  VXF94_RS02915 (VXF94_02915) ctaG 629530..630414 (-) 885 WP_014471807.1 cytochrome c oxidase assembly factor CtaG -
  VXF94_RS02920 (VXF94_02920) ctaF 630439..630771 (-) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  VXF94_RS02925 (VXF94_02925) ctaE 630774..631397 (-) 624 WP_013352146.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16885.96 Da        Isoelectric Point: 4.9442

>NTDB_id=845548 VXF94_RS02885 WP_013352152.1 626071..626520(-) (ylbF) [Bacillus amyloliquefaciens strain Fad 108]
MYATVESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=845548 VXF94_RS02885 WP_013352152.1 626071..626520(-) (ylbF) [Bacillus amyloliquefaciens strain Fad 108]
ATGTATGCAACAGTTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886