Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   V2189_RS24435 Genome accession   NZ_CP143908
Coordinates   5251116..5251640 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5246116..5256640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2189_RS24420 (V2189_24420) aroB 5247244..5248350 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  V2189_RS24425 (V2189_24425) aroK 5248400..5248918 (-) 519 WP_003095833.1 shikimate kinase AroK -
  V2189_RS24430 (V2189_24430) pilQ 5248930..5251062 (-) 2133 WP_023100018.1 type 4a pilus secretin PilQ Machinery gene
  V2189_RS24435 (V2189_24435) comL/pilP 5251116..5251640 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  V2189_RS24440 (V2189_24440) pilO 5251637..5252260 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  V2189_RS24445 (V2189_24445) pilN 5252257..5252853 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  V2189_RS24450 (V2189_24450) pilM 5252853..5253917 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  V2189_RS24455 (V2189_24455) - 5254102..5256573 (+) 2472 WP_003135771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=845491 V2189_RS24435 WP_003116136.1 5251116..5251640(-) (comL/pilP) [Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=845491 V2189_RS24435 WP_003116136.1 5251116..5251640(-) (comL/pilP) [Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362